Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 7e-12 >seq3 Length=132848913 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/146 (73%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTA 60039 |||| || |||| ||||| ||||||||| |||||||| ||||| || || | | Sbjct 126361108 AACGGGTCGTAGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGGTCTTTTGCATCCA 126361049 Query 60040 TTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTT 60099 | ||||||||||| || || || || ||||| ||||||| || |||||||| || ||| Sbjct 126361048 TATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTGACCTTTTCCAACGAACTTATTA 126360989 Query 60100 CCCGGGACGAGG---GCCTCCATCAG 60122 | | || |||| | ||| ||||| Sbjct 126360988 GCAGAGATGAGGTGAGTCTCGATCAG 126360963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520596928720