Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 seq12 95.1 1e-14 seq4 86.0 7e-12 seq3 82.4 8e-11 >seq13 Length=208334590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 12532697 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 12532756 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 12532757 CCGATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 12532816 Query 117425 ATCGT 117429 || || Sbjct 12532817 ATAGT 12532821 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 12532697 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 12532756 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 12532757 CCGATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 12532816 Query 152149 ATCGT 152153 || || Sbjct 12532817 ATAGT 12532821 >seq12 Length=61602749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| || || || |||||||| Sbjct 22014418 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAACCTGGTACCAAACTGA 22014359 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 22014358 CCAATGGGCTGTAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 22014299 Query 152149 ATCGT 152153 || || Sbjct 22014298 ATGGT 22014294 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| ||||| |||| || |||| ||||||||||||| |||| | ||||| || || Sbjct 22014418 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAACCTG-GTACCAAACTG 22014360 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| ||||||||||| || ||| |||||||| || |||||||| |||| Sbjct 22014359 ACCAATGGGCTGTAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGAT 22014300 Query 117424 AATCGT 117429 ||| || Sbjct 22014299 AATGGT 22014294 >seq4 Length=130910915 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||||| || ||||||||||| || | ||||| Sbjct 34847657 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 34847598 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| || || ||| || || || |||||| || ||||| ||| |||||||| Sbjct 34847597 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 34847538 Query 74892 AC 74893 || Sbjct 34847537 AC 34847536 >seq3 Length=132848913 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | ||| || ||||| | ||||||||||| ||||| || ||||| Sbjct 126360979 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCTTG 126361038 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || |||| || || ||| |||||||||||||| || |||||||| Sbjct 126361039 AGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCT 126361098 Query 74892 ACAAGGCGTT 74901 || | |||| Sbjct 126361099 ACGACCCGTT 126361108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211806957400