Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 >seq1 Length=274330532 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14357 CAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGA 14416 ||||||||||| || |||||| | | | ||||| ||||||||||| |||| || Sbjct 229466620 CAAGTACGACATGTCTGACATGCATTCGATTGCAAGGTTTGTCAAGTGGCAGTACTTTGA 229466679 Query 14417 GGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCAT 14476 || || | || || |||| ||||| || ||| |||||||||||| | | | | Sbjct 229466680 AGGCGACGTTTCCAAGGGCGCCCCCTACCCACCGTGCAGCGGCATCCACGTGCGCTCTGT 229466739 Query 14477 CTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAA 14536 ||| | ||||| |||| ||| |||| |||||| | || | ||| |||| ||||| Sbjct 229466740 GTGCGTTTTCGGAGCCGGTGACTTGAACTGGCTGCTGCGCACACATCACTTGTTTGCCAA 229466799 Query 14537 CAAGTTCGACGACGAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAG 14585 |||||||||| || | ||| |||||| | | ||| |||||||| Sbjct 229466800 CAAGTTCGACACAGACATCGACCTCTTCGCCATCCAGTGTTTGGACGAG 229466848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658734152410880