Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6 145 6e-30 seq5 134 1e-26 seq2 91.5 1e-13 >seq6 Length=170843587 Score = 145 bits (160), Expect = 6e-30 Identities = 291/424 (69%), Gaps = 8/424 (2%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| ||| | | | || |||| | ||||| ||||| | | || |||| Sbjct 62494951 TGGGAAAGGCCTTGGTC-CTCACTGAAGCTCTATTTTCAGTGGTTCAATGCGATTCAGGC 62494893 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | | || | |||| |||| |||| ||| | ||| || || |||| ||| | Sbjct 62494892 CAATGCGGGCATGTCCCGAAGTGTGTTCAAAGTCTATGGCTTC-AGGCCTGTGATGTGTG 62494834 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 |||||||| ||||| | | ||||||||| ||||| ||| | || || || ||||||| Sbjct 62494833 GGATCATGTAGGTGAGCAAGGGGTAGCTGGCAATGTTGAAGTGCACGCCCAGACCCATGT 62494774 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 |||||||| |||||| ||||| | || ||||| | || ||| ||| |||| || | Sbjct 62494773 CCCCCGACTCCTGGTACAGCTGGTAGGACAGCTCCCTGT---TCA-GTAGAACTTGCAAA 62494718 Query 30078 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30137 || ||||||| | | | | | | |||| | |||||||| | ||| || |||| || Sbjct 62494717 GGGTGTGGCACAGGGCAGGGGGCTTGAGAGGGAGCTCTTTGGGATCCCAAGCACACAGGA 62494658 Query 30138 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30197 |||| | ||||| || | |||| | |||| |||| | |||||||| || || | Sbjct 62494657 TGATTCTTCTGTCCTCAGAGTTGCTTTTGATTGTGTCC-TTACTTTTTGCAGTTGGTCTA 62494599 Query 30198 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257 | || || ||||| |||| |||| || |||| | || || ||||||||||||| Sbjct 62494598 CTCCTTGGCCTGAGTAATCTGAATTCATATCTTTGTATGCAGC-CCAAAATGCCTCCACT 62494540 Query 30258 GGAA 30261 | || Sbjct 62494539 GAAA 62494536 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 105645754 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 105645813 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||||| |||||| | ||| || || ||||| || | | Sbjct 105645814 ACACCCAGTCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTTACC 105645873 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| ||||| || || || |||||||| Sbjct 105645874 ACGTAGAACTGGCAAAGGGCATGGCATGGGGGGAGGGCCATGAG 105645917 Score = 98.7 bits (108), Expect = 8e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || |||| || ||||| |||||||||||||| || || || || || || | | Sbjct 105655143 TCATATCTTTGTATTCAGCTCCAAAATGCCTCCACTGAAAGCCATAAACAGGGCCTAAAT 105655202 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 | || ||||| ||| ||| ||| ||||||| ||||||| ||| || ||||| | Sbjct 105655203 CCCCTTCTTCTCTGGAGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCAT 105655262 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| || || ||||| || || || || | ||||||||| || Sbjct 105655263 CCCAGATTTTCACTCCCTTGGAGGACAGTTCCTTAGCGTTTGTGGATCC 105655311 >seq5 Length=104526007 Score = 134 bits (148), Expect = 1e-26 Identities = 438/662 (66%), Gaps = 30/662 (5%) Strand=Plus/Plus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 ||||||| || || || | || |||| | |||||||| || || | ||| ||| Sbjct 23434251 GGAAAGGC-CTTGGTTCTCCCTGAAGCTTCATTTTCAGCGGCTCAGTGTGGTTCAGATAG 23434309 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 ||||| || | ||||| ||| ||||| || ||| | | || || || ||||| | Sbjct 23434310 ACGTGTGCATATCCCAAAGCGTGTACAAAGTCGCCCAGCTTCAGACCTGTAACGTGTGTG 23434369 Query 29960 ATCATGTACGTGAGGAGAGAG-TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 ||| |||| ||||| || ||| |||||| |||||| ||||| || || || |||| || Sbjct 23434370 ATCGTGTAGGTGAGCAGGGAGGTAGCTGCTGATGTTGAAGGGCACACCCAGGACCATCTC 23434429 Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACACA 30077 || |||||||| || ||||| || | ||||| | | || || || | ||||| || | Sbjct 23434430 CC--GACCTCTGATATAGCTGGCAGGGCAGCTCACAGTTCACT-ACACAGAACTGGCAAA 23434486 Query 30078 TGGCGTGGCAC-GGAGGAAGAG-CCATGAGG--CCCAAG----TCTTTGGGGTTCCAGGC 30129 |||| ||||| || | |||| |||| | |||| ||||| || ||||| || Sbjct 23434487 GGGCGAGGCACAGGCAGCAGAGTGGGAGAGGGCCACAAGAAGATCTTTTGGATTCCAAGC 23434546 Query 30130 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAG 30189 |||| |||||| ||| || | |||| | ||| ||| | | |||||||| Sbjct 23434547 ACACAGGATGATTGTTGTGTTGTCAGTGTTGCTTACGATTGTGTCAATCACCTTTTGCAG 23434606 Query 30190 CTGATCCAC--CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 || ||||| ||| || | | ||||| ||| || |||| | | | ||| Sbjct 23434607 TTGGTCCACTTTTCCA-CCTGAAAAAATCTGCATCCATATCTTTGTATTTGACCCTCAAA 23434665 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA-AGCC 30306 ||| ||| | || || || || || || | || || |||| || | || | || Sbjct 23434666 CGCCCTCACGGTAAGCCATAAACTGGGCCTAAATCCCCTTCTT-----TGGTGGAGAACC 23434720 Query 30307 CC--TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 || ||| ||| | ||||||| ||| || ||| |||||||| || || ||||| | Sbjct 23434721 CCAGGCTT-TCC-AGAAGTCTCAGGATCCAAGGGCATCCCAGATTTTCACTCCCTTGGAA 23434778 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30424 || || ||||| | |||||||| | ||| ||||| || ||||| | || | Sbjct 23434779 GACAGGTCTTTAGCATTTGTGGATACCTTGATCAACCA---CAACTCCTTCCTAACACCG 23434835 Query 30425 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCC 30484 ||| | || || | ||||| || || |||||||| | |||| |||| ||| | ||| Sbjct 23434836 TTCTAGAAAACACGTTTGGTTGTCAGCAGGGGAAATTCATCCTTCAGGCTGTAGCGCGCC 23434895 Query 30485 TG 30486 || Sbjct 23434896 TG 23434897 >seq2 Length=151935994 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 89251885 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGGA 89251944 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 89251945 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTGCCT 89251992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406307364480396