Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq14 107 1e-18 >seq14 Length=141755446 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28259327 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28259268 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28259267 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28259208 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | || ||| | || ||||| | |||||| Sbjct 28259207 ATGCCTTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28259149 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || |||||||| |||||||| Sbjct 28259148 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 28259101 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28259783 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28259724 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28259723 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28259664 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || ||| | || ||||| | |||||| Sbjct 28259663 ATGCCTTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28259605 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || ||||| || |||||||| Sbjct 28259604 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259557 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28260239 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28260180 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28260179 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28260120 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || ||| | || ||||| | |||||| Sbjct 28260119 ATGCCTTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28260061 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || ||||| || |||||||| Sbjct 28260060 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260013 Score = 104 bits (114), Expect = 1e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| ||||| || || ||| |||||| || ||||| || || || || || ||| | Sbjct 28260683 CGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 28260624 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| || || || |||||||| || | | ||| ||||| || || | || |||||| Sbjct 28260623 TCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTG 28260564 Query 34612 TCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| |||||| | || || | || ||||| | ||||||||||| ||| || Sbjct 28260563 TCTTGGATCTTC-GCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGAT 28260505 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || ||||| || |||||||| Sbjct 28260504 GGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260469 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28258415 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28258356 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28258355 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28258296 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | || ||| | || ||||| | |||||| Sbjct 28258295 ATGCCTTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28258237 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || ||||| || |||||||| Sbjct 28258236 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258189 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28258871 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28258812 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28258811 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28258752 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | || ||| | || ||||| | |||||| Sbjct 28258751 ATGCCTTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28258693 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || ||||| || |||||||| Sbjct 28258692 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258645 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28259555 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28259496 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28259495 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28259436 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | || ||| | || ||||| | |||||| Sbjct 28259435 ATGCCTTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28259377 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || ||||| || |||||||| Sbjct 28259376 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259329 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28260011 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28259952 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28259951 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28259892 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | || ||| | || ||||| | |||||| Sbjct 28259891 ATGCCTTCCTTGTCCTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCAC 28259833 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || ||||| || |||||||| Sbjct 28259832 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259785 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28260467 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28260408 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28260407 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28260348 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || || | || ||||| | |||||| Sbjct 28260347 ATGCCTTCCTTGTCTTGGATCTTC-GCCTTGACATTCTCGATGGTGTCGCTGGGCTCCAC 28260289 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || ||||| || |||||||| Sbjct 28260288 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260241 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28258643 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28258584 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28258583 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28258524 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | || || | || ||||| | |||||| Sbjct 28258523 ATGCCTTCCTTGTCCTGGATCTTC-GCCTTGACATTCTCGATGGTGTCGCTGGGCTCCAC 28258465 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || ||||| || |||||||| Sbjct 28258464 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258417 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28259099 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28259040 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28259039 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28258980 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | || || | || ||||| | |||||| Sbjct 28258979 ATGCCTTCCTTGTCCTGGATCTTC-GCCTTGACATTCTCGATGGTGTCGCTGGGCTCCAC 28258921 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || ||||| || || || ||||| || |||||||| Sbjct 28258920 TTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258873 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || || | |||| || || ||| |||||| || ||||| || || || Sbjct 28258187 CCACCTCTGAGGCGGAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 28258128 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 28258127 AGGGTGCGCCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 28258068 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| || ||| ||||| || | ||| ||||| | ||||||| Sbjct 28258067 ATGCCCTCTTTTTCTTGAATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 28258008 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || ||||| || || || || ||||| |||||||| Sbjct 28258007 TCCAGGGTGATGGTCTTACCAGTCAAGGTCTTTACAAAGATCTGCAT 28257961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727248674829