Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 174 1e-38 >seq6 Length=170843587 Score = 174 bits (192), Expect = 1e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 105645766 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGTCCC 105645825 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| || || || | ||||||||||||||||||||| | |||||||| ||| Sbjct 105645826 ATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTTACCACGTAGAACTGG 105645885 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| ||||| |||||||| ||||| ||||||||||| Sbjct 105645886 CAAAGGGCATGGCATGGGGGGAGGGCCATGAGAGGGAGATC 105645926 Score = 174 bits (192), Expect = 1e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| |||||||| ||||| |||| ||||| |||||||| | ||| Sbjct 105645926 GATCTCCCTCTCATGGCCCTCCCCCCATGCCATGCCCTTTGCCAGTTCTACGTGGTAAAT 105645867 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || || || |||||||||||||| | || ||||| ||| Sbjct 105645866 GGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAGACATGGGACTGGGTGTGCCCTTC 105645807 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 105645806 AACATCGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 105645766 Score = 141 bits (156), Expect = 8e-29 Identities = 187/258 (72%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || || || || || |||| ||||| ||||| | || | ||||| | || | ||| Sbjct 62494580 GATTACTCAGGCCAAGGAGTAGACCAACTGCAAAAAGTAAG-GACACAATCAAAAGCAAC 62494638 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 |||| |||||||| ||| | |||| || ||| | || || || |||||||| | | | Sbjct 62494639 TCTGAGGACAGAAGAATCATCCTGTGTGCTTGGGATCCCAAAGAGCTCCCTCTCAAGCCC 62494698 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642 | ||| |||||||||||| ||| | |||||| ||| |||||||||||| |||| Sbjct 62494699 CCTGCCCTGTGCCACACCCTTTGCAAGTTCTACT----GAACAGGGAGCTGTCCTACCAG 62494754 Query 34643 CTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCT 34702 || || || ||||| |||||||| | || |||| ||||||||||| || ||| | Sbjct 62494755 CTGTACCAGGAGTCGGGGGACATGGGTCTGGGCGTGCACTTCAACATTGCCAGCTACCCC 62494814 Query 34703 CTGCTCACGTACATGATC 34720 ||||||| ||||||||| Sbjct 62494815 TTGCTCACCTACATGATC 62494832 Score = 141 bits (156), Expect = 8e-29 Identities = 187/258 (72%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 6625 GATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTC 6684 ||||||||| ||||||| | ||| || ||||||||||| |||| || | |||||||| Sbjct 62494832 GATCATGTAGGTGAGCAAGGGGTAGCTGGCAATGTTGAAGTGCACGCCCAGACCCATGTC 62494773 Query 6685 TCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAG 6744 ||||| || || |||||| |||||||||||| ||| |||||| | ||| || Sbjct 62494772 CCCCGACTCCTGGTACAGCTGGTAGGACAGCTCCCTGTTC----AGTAGAACTTGCAAAG 62494717 Query 6745 GGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCAC 6804 |||||||||| ||| | | | | |||||||| || || || | ||| || |||| | Sbjct 62494716 GGTGTGGCACAGGGCAGGGGGCTTGAGAGGGAGCTCTTTGGGATCCCAAGCACACAGGAT 62494657 Query 6805 GATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGC 6864 ||| |||||||| |||| ||| | || | ||||| | || | ||||| ||||| | Sbjct 62494656 GATTCTTCTGTCCTCAGAGTTGCTTTTGATTGTGTC-CTTACTTTTTGCAGTTGGTCTAC 62494598 Query 6865 TCCCTGTCCCGAATAGTC 6882 ||| || || || || || Sbjct 62494597 TCCTTGGCCTGAGTAATC 62494580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258965189360