Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1 203 3e-47 seq13 183 3e-41 >seq1 Length=274330532 Score = 203 bits (224), Expect = 3e-47 Identities = 384/557 (69%), Gaps = 10/557 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| | | || |||||| | || || || | | ||||| Sbjct 31909779 CTAAACTGCATCGTTGCTGTGCCCCAGAACATGGGCTTCGGCAAGAACGAGGACCTGCCC 31909838 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 |||||||| || | ||||| | ||| ||| |||| |||||| | | ||||| Sbjct 31909839 TGGCCTCCACTCAGGAATGACTACAAATGTTTCCAAAGAATGACCACAACCTCTTCAGTA 31909898 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || | |||||| || ||||| |||||| || |||| || Sbjct 31909899 GAAGGCAAACAGAATTTGGTGACTATGGGTAGGAAGACCTGGTTTCCA-TTCCAGAGAAG 31909957 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || ||||||| ||| |||||||||||| | || || || || ||| Sbjct 31909958 AATTGACCTTTAAAGGACAGAATTAATACAGTTCTCAGTAGAGAACTCAAGGAACCTCCA 31910017 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTA-TAATAGGACC 2435 | || ||||| ||| |||| |||||| | ||| | || | || ||| | | | | || Sbjct 31910018 CAGGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAACTTACTGAGAAG-CC 31910076 Query 2436 AGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495 |||||||||| | | ||||| | | ||||| || | || || || || || ||| |||| Sbjct 31910077 AGAATTAAAAAATAAAGTGGACATGGTTTGGCTAGTGGGAGGCAGTTCAGTTTATAAGGA 31910136 Query 2496 GAGCATTA-CAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 ||| | |||| | || | | | || ||| | |||||||| || || |||||| Sbjct 31910137 AGCCATGAACAAGC-CAGGCCATCTTAGACTTTTTGTGACAAGGATCATGAAAGAATTTG 31910195 Query 2555 AATGTGATACATACTT--CCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612 || |||| |||| || |||||||||| | | ||||| |||| || | |||| Sbjct 31910196 AAAGTGACACATTTTTTTCCCAGAAATTGACTTGGAAAAATATAAACTTCTCCCAGAATA 31910255 Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATA 2672 | |||| ||||| |||| || || ||||| || || |||| ||||| ||||| |||| Sbjct 31910256 TTCAGGAGTTCCTTCTGATGTCCAGGAAGAGAAAGGCATTAAGTACAACTTTGAAGTATA 31910315 Query 2673 TGaaaaaaaaaCATAAT 2689 ||||| || | |||| Sbjct 31910316 GGAAAAGAACAATTAAT 31910332 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 158339138 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 158339197 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 158339198 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 158339257 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 158339258 ATCGCCCTGTGGATGACTGA 158339277 >seq13 Length=208334590 Score = 183 bits (202), Expect = 3e-41 Identities = 191/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || ||||||||||||||| Sbjct 147478455 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTGAGCCCAGAAAACATG 147478396 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| || || || |||| |||||||| |||||||| || || || || || || ||| Sbjct 147478395 ATCACCTTCAGCAAGAACCATGGGGTTGTAGTTCAGCCTGCTTATAAGGACAAGATAAAC 147478336 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 147478335 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 147478276 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || || || |||||||| | || || || ||||| | |||||||| |||||||||| Sbjct 147478275 GAGGGTTGTTACAAGTGCCTCTTCAATACCTTTGGTGCCGGGAAGATCTCAGGAATAGCC 147478216 Query 1515 TGTCTAACCCT 1525 || || ||||| Sbjct 147478215 TGCCTCACCCT 147478205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414473703469732