Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq12 100 2e-16 >seq12 Length=61602749 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| |||||| || || || ||||| | ||| || || | || || Sbjct 59171886 ACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCCTCC 59171945 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || | ||||||||||| ||| | || ||| || ||| | Sbjct 59171946 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 59172005 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | || || || | |||||| |||| ||||| | || Sbjct 59172006 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 59172065 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 || ||||| || || || ||||| ||||| || || Sbjct 59172066 CCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 59172100 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| |||||| || || || ||||| | ||| || || | || || Sbjct 59171658 ACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 59171717 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || | ||||||||||| ||| | || || || ||| | Sbjct 59171718 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGG 59171777 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | || || || | |||||| |||| ||||| | || Sbjct 59171778 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 59171837 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || || ||||| ||||| Sbjct 59171838 CCGGTCAAGGTCTTCACGAAGATCTGCAT 59171866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429542390891669