Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12 154 4e-32 seq14 143 6e-29 seq613 127 5e-24 seq9 127 5e-24 seq7 122 2e-22 seq2 107 5e-18 seq1 96.9 8e-15 >seq12 Length=61602749 Score = 154 bits (170), Expect = 4e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || ||||||||||| ||||| |||| |||||||| | | ||| | ||||| Sbjct 59171654 CAGAACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 59171713 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || |||||||| ||||| |||||||| || Sbjct 59171714 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATC 59171773 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || ||||| || | ||||| || Sbjct 59171774 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 59171833 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||| || || | ||| | ||||| Sbjct 59171834 CTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171866 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||||||||| ||||| |||| |||||||| | | ||| | |||||| Sbjct 59171427 AGGACCAGATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 59171486 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || ||||| |||||||| || Sbjct 59171487 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 59171546 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 59171547 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 59171606 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 59171607 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 59171638 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || ||||| ||||| ||||| |||| |||||||| | | ||| | ||||| Sbjct 59171882 CAGAACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 59171941 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || || ||||| || | || |||||||| ||||| || ||||| || Sbjct 59171942 CTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATC 59172001 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || ||||| || | ||||| || Sbjct 59172002 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 59172061 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | |||||||| Sbjct 59172062 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 59172097 >seq14 Length=141755446 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28260452 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28260393 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || |||||||||||| Sbjct 28260392 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 28260333 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||| Sbjct 28260332 TGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28260273 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 28260272 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260241 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| || ||||| || || |||| ||||| || | || || | |||||| Sbjct 28260681 CAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 28260622 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| || ||||| || | || ||||| || || || ||||||||||| Sbjct 28260621 TTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTC 28260562 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 28260561 TTGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGT 28260502 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||| || || | ||| | ||||| Sbjct 28260501 CTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260469 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28258628 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28258569 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || ||||||||||| Sbjct 28258568 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28258509 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||| Sbjct 28258508 TGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28258449 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 28258448 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258417 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28259084 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259025 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || ||||||||||| Sbjct 28259024 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28258965 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||| Sbjct 28258964 TGGATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28258905 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 28258904 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258873 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28259768 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259709 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || |||||||||||| Sbjct 28259708 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 28259649 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 28259648 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28259589 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 28259588 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259557 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28260224 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28260165 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || |||||||||||| Sbjct 28260164 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 28260105 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 28260104 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28260045 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 28260044 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28260013 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28258400 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28258341 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || ||||||||||| Sbjct 28258340 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28258281 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 28258280 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28258221 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 28258220 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258189 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28258856 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28258797 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || ||||||||||| Sbjct 28258796 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28258737 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 28258736 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28258677 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 28258676 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28258645 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28259540 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259481 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || ||||||||||| Sbjct 28259480 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28259421 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 28259420 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28259361 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 28259360 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259329 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28259996 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259937 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || ||||||||||| Sbjct 28259936 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28259877 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 28259876 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28259817 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 28259816 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 28259785 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28259312 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28259253 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || ||||||||||| Sbjct 28259252 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 28259193 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || ||||| || | ||||| ||| Sbjct 28259192 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 28259133 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || ||||| || || Sbjct 28259132 TTACCAGTCAAGGTCTT 28259116 Score = 123 bits (136), Expect = 6e-23 Identities = 162/223 (73%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| ||||| || | || || | ||||||| Sbjct 28258172 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 28258113 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || || || || ||| Sbjct 28258112 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCT 28258053 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || |||||||| || ||||| || | ||||| ||| Sbjct 28258052 TGAATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 28257993 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTAC 225724 || || ||||| || |||| || | |||||| | | ||||| Sbjct 28257992 TTACCAGTCAAGGTCTTTACAAAGATCTGCATTGTCT-GTTAC 28257951 >seq613 Length=16613 Score = 127 bits (140), Expect = 5e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || || || ||| |||| || ||||||||||| || || |||||| | || || Sbjct 6664 CAAATCTATAATGTAATTGTTACAGCTCATGCCTTTGTAATAATCTTCTTTATAGTAATA 6723 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || ||||||| || ||||| || || ||| |||| || |||| || || ||||| ||| Sbjct 6724 CCCATTATGATTGGGGGTTTTGGTAACTGACTCGTACCGCTAATAATCGGAGCTCCCGAT 6783 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||||| |||||| | | ||||| |||||||| ||| |||| || || ||||| Sbjct 6784 ATGGCCTTTCCACGTATAAACAACATAAGTTTCTGACTACTTCCACCATCCTT 6836 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| || || || ||||||||||| || ||||||||||||||||| || || || | Sbjct 7240 ATACTTCTGGGTGTCCGAAAAATCAGAACAAGTGTTGATAAAGGATAGGGTCTCCACCAC 7181 Query 370728 CTGATGGATCAAAAAAGCTAGTATT 370752 ||| ||||||||||||| | || || Sbjct 7180 CTGCTGGATCAAAAAAGGTTGTGTT 7156 >seq9 Length=139512083 Score = 127 bits (140), Expect = 5e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || || || ||| |||| || ||||||||||| || || |||||| | || || Sbjct 4701343 CAAATCTATAATGTAATTGTTACAGCTCATGCCTTTGTAATAATCTTCTTTATAGTAATA 4701284 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || ||||||| || ||||| || || ||| |||| || |||| || || ||||| ||| Sbjct 4701283 CCCATTATGATTGGGGGTTTTGGTAACTGACTCGTACCGCTAATAATCGGAGCTCCCGAT 4701224 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||||| |||||| | | ||||| |||||||| ||| |||| || || ||||| Sbjct 4701223 ATGGCCTTTCCACGTATAAACAACATAAGTTTCTGACTACTTCCACCATCCTT 4701171 >seq7 Length=121844099 Score = 122 bits (134), Expect = 2e-22 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || |||||||| | ||||| | ||| | | |||||| Sbjct 52639601 ACGAAGTCTCAATACAAGATGAAGAGTGGACACCTTTTG---AGTGTCGT-AGTCAAAGT 52639546 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||| || ||||| ||||| ||| | |||| ||| ||||| |||||||| || Sbjct 52639545 AGGTCCATCTTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGGTCAGGCGGAATTCC 52639486 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 | ||| || |||||||| ||| ||| ||| | || ||||||| ||| || || | Sbjct 52639485 TATCTTATCCTGGATCTTAGCCTTTACATTTTCTAATGTATCTGAGGGTTCAACCTCGAG 52639426 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 52639425 AGTGATGGTCTTGCCTGTCA 52639406 >seq2 Length=151935994 Score = 107 bits (118), Expect = 5e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || || ||| |||| || |||||||| || || || || ||| | || || Sbjct 115564229 CCAAATTTATAATGTAATTGTTACAGCCCATGCCTTCGTAATAATCTTTTTTATAGTAAT 115564288 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || ||||||| || ||||| || ||||| | || || ||||| ||||| || || || Sbjct 115564289 ACCCATTATGATTGGAGGTTTTGGCAATTGGCTTGTACCATTAATAATTGGAGCACCCGA 115564348 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||| || || ||| | || ||||||||||| ||| |||| || || || || Sbjct 115564349 TATAGCCTTCCCACATATGAATAATATAAGTTTCTGACTACTTCCACCATCTTT 115564402 >seq1 Length=274330532 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || || | || ||| ||| |||||||||||||| ||||||| Sbjct 95742866 CACTTCAGTACCTGGCTCCTTATTCTGGATGTTCTATGGGAGAATATTTTAGGGATAATG 95742807 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| |||||||| ||||| ||| ||||| |||| Sbjct 95742806 GCAAACATGCTTTGATCATCTATGATGACTTATCCAAACAGGTCAA 95742761 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||||| || |||||||| || || || || || || || || |||||||| |||||||| Sbjct 95742420 GAATACCTGTCCATCAGTGATGGAAATGACGTTGGTTGGAATGTAAGCAGACACATCACC 95742479 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||||||||||| || ||||| || || | || |||||||| ||| Sbjct 95742480 AGCTTGTGTTTCGATGACTGGTAAAGCAGTCAAGGAGCCACCACCGAAA 95742528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192521833785422