Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6 149 5e-31 seq2 82.4 6e-11 >seq6 Length=170843587 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 105645754 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 105645813 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || |||| |||||| | |||||| || ||||| || | | Sbjct 105645814 ACACCCAGTCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTTACC 105645873 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||| || || |||||||||||| Sbjct 105645874 ACGTAGAACTGGCAAAGGGCATGGCATGGGGGGAGGGCCATGAGA 105645918 Score = 143 bits (158), Expect = 2e-29 Identities = 264/381 (69%), Gaps = 7/381 (2%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| ||| | | | || |||| || |||| ||||| | | | | ||| Sbjct 62494951 TGGGAAAGGCCTTGGTC-CTCACTGAAGCTCTATTTTCAGTGGTTCAATGCGATTCAGGC 62494893 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | | |||| |||| ||||| |||| ||| | ||| || || |||| ||| | Sbjct 62494892 CAATGCGGGCATGTCCCGAAGTGTGTTCAAAGTCTATGGCTTC-AGGCCTGTGATGTGTG 62494834 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 |||||||| ||||| | | ||||||||| ||||| ||| |||| || || ||||||| Sbjct 62494833 GGATCATGTAGGTGAGCAAGGGGTAGCTGGCAATGTTGAAGTGCACGCCCAGACCCATGT 62494774 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 |||| ||| |||||| |||||| | || ||||| | || ||| ||| |||| || | Sbjct 62494773 CCCCCGACTCCTGGTACAGCTGGTAGGACAGCTCCCTGT---TCA-GTAGAACTTGCAAA 62494718 Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGA 29909 || |||||| | | | ||| | ||||| | |||||||| | ||| ||||||| || Sbjct 62494717 GGGTGTGGCACAGGGCAGGGGGCTTGAGAGGGAGCTCTTTGGGATCCCAAGCACACAGGA 62494658 Query 29910 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 29969 |||| | ||||| || | |||| | |||| |||| | |||||||| || || | Sbjct 62494657 TGATTCTTCTGTCCTCAGAGTTGCTTTTGATTGTGTCC-TTACTTTTTGCAGTTGGTCTA 62494599 Query 29970 CCCCCATCCCCGAGTAGTCTG 29990 | || || ||||| |||| Sbjct 62494598 CTCCTTGGCCTGAGTAATCTG 62494578 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || || || || | || || ||||| ||| ||| Sbjct 105655166 AAATGCCTCCACTGAAAGCCATAAACAGGGCCTAAATCCCCTTCTTCTCTGGAGGAGAAT 105655225 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||||| ||| || ||||| |||||||| || || ||||| | Sbjct 105655226 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAG 105655285 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || || || | ||||||||| || Sbjct 105655286 GACAGTTCCTTAGCGTTTGTGGATCC 105655311 >seq2 Length=151935994 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 89251885 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGGA 89251944 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 89251945 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTGCCT 89251992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406160165580118