Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq15 226 2e-54 seq3 116 3e-21 seq4 91.5 1e-13 >seq15 Length=140412725 Score = 226 bits (250), Expect = 2e-54 Identities = 583/884 (66%), Gaps = 37/884 (4%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||||| ||| || |||| || || || ||||| | |||||||| ||| Sbjct 19879699 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGTGAAATATTCTCC 19879640 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG---AGCTACAAGC 4376 ||||| ||||| ||||| | | || || || || || |||| || | Sbjct 19879639 ATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTG-----CTGAAGCCCAGCTCCAGCC 19879585 Query 4377 --AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA 4434 | || ||| || || || || || ||||| |||| | ||| || || ||| | | Sbjct 19879584 TGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCATCCCAGTGA 19879525 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 |||| || ||| | | | | || ||||| |||||||| | || || | |||||| Sbjct 19879524 GCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCATTGATGATTA 19879465 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 | ||||| | | | | | || ||||| | || | | | |||| | || |||| Sbjct 19879464 TTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAACATCAGGCAGGCAA 19879405 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 | || || || ||||| || ||||||||||| |||| | || |||| Sbjct 19879404 AGTCGCAGTGTAAACCCTCATCTCTGCTAAT--------------ACGTCAGGCCAGGCA 19879359 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | | |||| || || ||||| ||| | | ||||| || ||||||||||| || |||| Sbjct 19879358 TCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGAAAATTCCTT 19879299 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT--TTGTCTTTAATCCA 4732 | ||||| ||||| | | | || || ||| | | || ||||| ||||| Sbjct 19879298 CCACGGCAGCAAAGGTGATGACACGTTCTCC--ACGTGGAGCCTCTTTGTCCCCCATCCA 19879241 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA- 4791 | || ||||||| || | ||||| || || || ||||| | || || || || | Sbjct 19879240 GTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAG 19879181 Query 4792 --ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 ||| |||| || ||| |||| || ||||| || || || ||||||||||||| Sbjct 19879180 AAATTCGCTTTCTT----TGGAATCTTTGATGTAAGTATCAATGAGGAGGCTATACATTT 19879125 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 |||||||||| ||||| || ||||| || || || || || || | ||||||||| | | Sbjct 19879124 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCTGTAATCT 19879065 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 ||| ||| | | ||| | || || |||||||| | || || || ||||| ||||||| Sbjct 19879064 GAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTTGCTGCAA 19879005 Query 4969 AAAACGCCAA-AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGG 5027 | || ||||| | ||| || ||||| || || | |||||| | ||| |||||| Sbjct 19879004 AGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGTTTCCCAGTGT 19878945 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 | | | || | | | || || ||| | |||||||| || || || || || || Sbjct 19878944 TGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTGCCTTCTTA 19878885 Query 5088 TACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||||| ||| || ||| | || | || |||| |||||||| Sbjct 19878884 TACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq3 Length=132848913 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| |||||||| ||||| || | || ||||| | |||| || || Sbjct 126360979 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCTTG 126361038 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| |||||||||||||| |||||||| ||||||||||| ||| Sbjct 126361039 AGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCT 126361098 Query 4692 AC 4693 || Sbjct 126361099 AC 126361100 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| || |||||||| || || ||||||||||||||||||||||| ||||| || ||| Sbjct 126363344 TCTTTGATGTAAGTGTCGATGAGGAGGCTATACATTTCAGAATGTATGTTTTCCATGGCA 126363403 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||| || | |||||||| Sbjct 126363404 ATTTGGAAGCCATAGAAACAACGAGCTTCGGTAATCTGAACTTC 126363447 >seq4 Length=130910915 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 ||||||| | | ||| |||||||| || || || || ||||||||||||||||| || || Sbjct 34842265 ACAAAATATCT-TACCAAGTTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAA 34842207 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038 | ||||| ||||| |||| || || | ||||| | |||||||| || | ||| || Sbjct 34842206 GATGTGAGAGATAAAATACTTCTCATCTGATTTAAGCCTGTTCCAGTGAGGGAGATCCTT 34842147 Query 5039 AGTTAAATCAAC 5050 | ||| ||||| Sbjct 34842146 TGATAAGTCAAC 34842135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427046409539129