Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 seq5 127 2e-24 >seq6 Length=170843587 Score = 136 bits (150), Expect = 3e-27 Identities = 288/424 (68%), Gaps = 8/424 (2%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| ||| | | | || |||| | ||||| ||||| | | ||| |||| Sbjct 62494951 TGGGAAAGGCCTTGGTC-CTCACTGAAGCTCTATTTTCAGTGGTTCAATGCGATTCAGGC 62494893 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | | || | |||| ||||| |||| ||| | ||| || || |||| ||| | Sbjct 62494892 CAATGCGGGCATGTCCCGAAGTGTGTTCAAAGTCTATGGCTTC-AGGCCTGTGATGTGTG 62494834 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 |||||||| ||||| | | ||||||||| ||||| ||| | || || || ||||||| Sbjct 62494833 GGATCATGTAGGTGAGCAAGGGGTAGCTGGCAATGTTGAAGTGCACGCCCAGACCCATGT 62494774 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 |||||||| |||||| ||||| | || ||||| | || ||| |||| || | Sbjct 62494773 CCCCCGACTCCTGGTACAGCTGGTAGGACAGCTC----CCTGTTCAGTAGAACTTGCAAA 62494718 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403 || ||||||| | | | | | | |||| | |||||||| | ||| || |||| || Sbjct 62494717 GGGTGTGGCACAGGGCAGGGGGCTTGAGAGGGAGCTCTTTGGGATCCCAAGCACACAGGA 62494658 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 |||| | ||||| || | |||| | |||| |||| | |||||||| || || | Sbjct 62494657 TGATTCTTCTGTCCTCAGAGTTGCTTTTGATTGTGTCC-TTACTTTTTGCAGTTGGTCTA 62494599 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | || || ||||| ||| |||| || |||| | || || ||||||||||| | Sbjct 62494598 CTCCTTGGCCTGAGTAATCTGAATTCATATCTTTGTATGCAGC-CCAAAATGCCTCCACT 62494540 Query 27524 GGAA 27527 | || Sbjct 62494539 GAAA 62494536 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 105645754 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 105645813 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||||| |||||| | ||| || || ||||| |||| Sbjct 105645814 ACACCCAGTCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTTACC 105645873 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||| || || || |||||||| Sbjct 105645874 ACGTAGAACTGGCAAAGGGCATGGCATGGGGGGAGGGCCATGAG 105645917 Score = 98.7 bits (108), Expect = 7e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || |||| || ||||| ||||||||||| || || || || || || || | | Sbjct 105655143 TCATATCTTTGTATTCAGCTCCAAAATGCCTCCACTGAAAGCCATAAACAGGGCCTAAAT 105655202 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 | || ||||| ||| ||| ||| ||||||| ||||||| ||| || ||||| | Sbjct 105655203 CCCCTTCTTCTCTGGAGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCAT 105655262 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||| || || ||||| ||| || || || | ||||||||| || Sbjct 105655263 CCCAGATTTTCACTCCCTTGGAGGACAGTTCCTTAGCGTTTGTGGATCC 105655311 >seq5 Length=104526007 Score = 127 bits (140), Expect = 2e-24 Identities = 434/661 (66%), Gaps = 28/661 (4%) Strand=Plus/Plus Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165 ||||||| || || || | || |||| | |||||||| || ||| | ||| ||| Sbjct 23434251 GGAAAGGC-CTTGGTTCTCCCTGAAGCTTCATTTTCAGCGGCTCAGTGTGGTTCAGATAG 23434309 Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225 ||||| || | ||||| | ||| ||||| || ||| | | || || || ||||| | Sbjct 23434310 ACGTGTGCATATCCCAAAGCGTGTACAAAGTCGCCCAGCTTCAGACCTGTAACGTGTGTG 23434369 Query 27226 ATCATGTACGTGAGGAGAGAG-TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 ||| |||| ||||| || ||| |||||| |||||| ||||| || || || |||| || Sbjct 23434370 ATCGTGTAGGTGAGCAGGGAGGTAGCTGCTGATGTTGAAGGGCACACCCAGGACCATCTC 23434429 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 || |||||||| || ||||| || | ||||| | | ||| | ||||| || | Sbjct 23434430 CC--GACCTCTGATATAGCTGGCAGGGCAGCTCACAGTTCACTACACAGAACTGGCAAAG 23434487 Query 27345 GGCGTGGCAC-GGAGGAAGAG-CCATGAGG--CCCAAG----TCTTTGGGGTTCCAGGCG 27396 |||| ||||| || | |||| |||| | |||| ||||| || ||||| || Sbjct 23434488 GGCGAGGCACAGGCAGCAGAGTGGGAGAGGGCCACAAGAAGATCTTTTGGATTCCAAGCA 23434547 Query 27397 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 27456 |||| |||||| ||| || | |||| | ||| ||| | | |||||||| Sbjct 23434548 CACAGGATGATTGTTGTGTTGTCAGTGTTGCTTACGATTGTGTCAATCACCTTTTGCAGT 23434607 Query 27457 TGATCCAC--CCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAAT 27514 || ||||| ||| || | | ||| | ||| || |||| | | | ||| Sbjct 23434608 TGGTCCACTTTTCCA-CCTGAAAAAATCTGCATCCATATCTTTGTATTTGACCCTCAAAC 23434666 Query 27515 GCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA-AGCCC 27573 ||| || | || || || || || || | || || |||| || | || | ||| Sbjct 23434667 GCCCTCACGGTAAGCCATAAACTGGGCCTAAATCCCCTTCTT-----TGGTGGAGAACCC 23434721 Query 27574 C--TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 27631 | ||| ||| | ||||||| ||| || ||| |||||||| || || ||||| | Sbjct 23434722 CAGGCTT-TCC-AGAAGTCTCAGGATCCAAGGGCATCCCAGATTTTCACTCCCTTGGAAG 23434779 Query 27632 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 27691 | || ||||| | |||||||| | ||| ||||| || ||||| | || | | Sbjct 23434780 ACAGGTCTTTAGCATTTGTGGATACCTTGATCAACCA---CAACTCCTTCCTAACACCGT 23434836 Query 27692 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCT 27751 || | || || | ||||| || || |||||||| | |||| |||| ||| | |||| Sbjct 23434837 TCTAGAAAACACGTTTGGTTGTCAGCAGGGGAAATTCATCCTTCAGGCTGTAGCGCGCCT 23434896 Query 27752 G 27752 | Sbjct 23434897 G 23434897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369504439434803