Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 336 3e-87 seq9 125 1e-23 seq3 120 4e-22 >seq15 Length=140412725 Score = 336 bits (372), Expect = 3e-87 Identities = 637/936 (68%), Gaps = 25/936 (3%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| || ||||| |||||||| | Sbjct 19879760 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCCGACTCGACATCACTCCCATCCT 19879701 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| | || || || || ||||||| ||| ||||| || Sbjct 19879700 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCTTCCAGTGAAATATTCTC 19879641 Query 47912 CATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG 47971 |||||| ||||| ||||| || | | ||| || | || || | || | || Sbjct 19879640 CATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAGCCCAGCTCCAGCCTGAG 19879581 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 ||| ||||| ||||| || || || |||||| | |||||||| || | || || Sbjct 19879580 TCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAATTCATCCCAGTGAGCTT 19879521 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 || || || |||| | | ||||| ||||| || | || |||| | ||||| Sbjct 19879520 CACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACTGCATTGATGATTATTTC 19879461 Query 48092 TGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATC 48151 | | || | | ||| ||| | | || |||| ||||| | || ||||| || Sbjct 19879460 TTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAACATCAGGCAGGCAAAGTC 19879401 Query 48152 ACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAG 48211 || || | ||| |||||||| ||||| | || || || ||||| || Sbjct 19879400 GCAGTGTAAACCCTCATCTCTGCTAAT--------------ACGTCAGGCCAGGCATCAG 19879355 Query 48212 TCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 48271 ||| ||||| |||||||| ||| | | || ||||| ||||||||||| || ||||| || Sbjct 19879354 TCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGAAAATTCCTTCCAC 19879295 Query 48272 GGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG--CTTCGTTGTGT---ATCCACCGT 48326 ||| ||||| | | | | | ||||| | ||| | || |||| ||||| | Sbjct 19879294 GGCAGCAAAGGTGATGACACGTTCTCC--ACGTGGAGCCTCTTTGTCCCCCATCCAGTGC 19879237 Query 48327 TGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 48386 ||||| || |||| ||||||||||||||||||||| || || ||||| |||||||| Sbjct 19879236 AAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGAAAT 19879177 Query 48387 tttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGA 48446 | |||| ||| |||||| | ||||||||| || | || ||||||||||| || || Sbjct 19879176 TCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTATACATTTCAGAATGT 19879117 Query 48447 ATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCC 48506 || ||||| || || || || || || || ||||| | |||||||| ||||| | || Sbjct 19879116 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCTGTAATCTGAATTTCT 19879057 Query 48507 GTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCT 48566 | ||| | || |||| || |||| || || |||||||| || ||||| || || Sbjct 19879056 TGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTTGCTGCAAAGAAAGCC 19878997 Query 48567 AATA-CATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 || | |||| |||||||||| | || || | ||| | | ||||| | || | Sbjct 19878996 AAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGTTTCCCAGTGTTGAATGCC 19878937 Query 48626 TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATT 48685 || || | | || || |||||||||||||| || |||||||| || |||||||| | Sbjct 19878936 CTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTGCCTTCTTATACATCTG 19878877 Query 48686 CCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 ||| || ||| ||||| ||| || || || ||||| Sbjct 19878876 CCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq9 Length=139512083 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||| | || Sbjct 6031380 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATGGAC 6031439 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||||||| ||||| || |||||||| ||||| ||||| | | ||| || Sbjct 6031440 TCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAGCTG 6031499 Query 77247 TTTC 77250 |||| Sbjct 6031500 TTTC 6031503 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || || || ||||| |||||||| || |||||||| || ||| Sbjct 6048519 GTGCCAGCATTGAAGAGAGTGGGCGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 6048578 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 6048579 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 6048638 Query 78519 ATATGCTGAGGTCTTTC 78535 |||||||| |||||||| Sbjct 6048639 ATATGCTGTGGTCTTTC 6048655 >seq3 Length=132848913 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | |||||| ||||| || || || ||||| ||||| ||||| ||| Sbjct 126360979 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCTTG 126361038 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| |||||||| ||||| ||||| || Sbjct 126361039 AGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGC 126361097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663477100320