Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 313 4e-80 seq9 125 1e-23 seq3 113 6e-20 seq4 98.7 1e-15 >seq15 Length=140412725 Score = 313 bits (346), Expect = 4e-80 Identities = 608/894 (68%), Gaps = 24/894 (3%) Strand=Plus/Minus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| | || || || ||||| | ||||| | || || || || ||| Sbjct 19879717 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTCGTCTTCCCT 19879658 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAAT 46443 |||| ||| ||||| |||||||| ||||| ||||| || | ||| || | || Sbjct 19879657 TCCAGTGAAATATTCTCCATAAAGTCAAAGGGATTTTCTACTCTGAAAACCTTGCTGAAG 19879598 Query 46444 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA 46503 || | || | ||||| ||||| ||||| || || ||| |||||| | ||| Sbjct 19879597 CCCAGCTCCAGCCTGAGTCTGTCTGCCACGAACTCAATGTACTGTTTCATTAAAGTGCAA 19879538 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || |||| || ||||| || |||| | | ||||| ||||| || | || Sbjct 19879537 TTCATCCCAGTGAGCTTCACCGGCAGCTCCTCTATGAAGAACTCCTGTTCTATCCTAACT 19879478 Query 46564 GCATCCGAT-ATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAA 46622 |||| ||| ||||| | | ||| | | ||| ||| || | || |||| || Sbjct 19879477 GCATT-GATGATTATTTCTTTCACTCTCTGCTCCGAAGGTTTGTGTAGCAGGAGTTTGAA 19879419 Query 46623 CATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAA 46682 ||| | || ||||| || || || | || |||||||| ||||| | Sbjct 19879418 CATCAGGCAGGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTAAT--------------A 19879373 Query 46683 TGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGA 46742 || || |||||||| ||||| || || |||||||| ||| | | || ||||| ||||| Sbjct 19879372 CGTCAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGA 19879313 Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG--CATCA 46800 |||||| || ||||| || || || || | || | | ||||| | ||| | || Sbjct 19879312 AAAGAAAATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCC--ACGTGGAGCCTCT 19879255 Query 46801 TTATGAATCCACCTTTGA---GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || | | || || ||||| || |||| |||||||||||||||||||| || Sbjct 19879254 TTGTCCCCCATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCG 19879195 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 || ||||| |||||||| | |||| | |||||| | || ||||| || | || Sbjct 19879194 ATGGCATTGAAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGG 19879135 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 ||||||||||| ||||| |||||||| || || || || || || || ||||| | ||| Sbjct 19879134 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCT 19879075 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 || |||||||| | ||| | ||| | || ||| || |||| ||| || |||||| Sbjct 19879074 TCTGTAATCTGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCA 19879015 Query 47038 CTAGCAGCAAAAAATGCCAATA-CATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 || || ||||| || ||||| | |||| |||||||||| | || | | ||| | Sbjct 19879014 CTTGCTGCAAAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCATGGT 19878955 Query 47097 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTC 47156 | ||||| | || | || || | | || || ||||||||||| || || ||||| Sbjct 19878954 TTCCCAGTGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTC 19878895 Query 47157 TGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 ||| || |||||||| | ||| || ||| | |||| ||| ||||| || ||||| Sbjct 19878894 TGCCTTCTTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq9 Length=139512083 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||| | || Sbjct 6031380 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTACTGGTGTAAGGTTCAATGGAC 6031439 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||||||| ||||| || |||||||| ||||| ||||| | | ||| || Sbjct 6031440 TCATTATTTCCCAAAATCTGAGCGGTGGAAGCAGTAGGCATCGGTGCGATAAGTAAGCTG 6031499 Query 75842 TTTC 75845 |||| Sbjct 6031500 TTTC 6031503 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || || || ||||| || ||||| || |||||||| || ||| Sbjct 6048519 GTGCCAGCATTGAAGAGAGTGGGCGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 6048578 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 6048579 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 6048638 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 6048639 ATATGCTGTGGTCTTTC 6048655 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| ||||| || ||||| | || || ||||| || || || || || || Sbjct 6054770 CTGAACACTTTCTTTGTCTCTTTGTGCAAGTTGGAGACGGCAATCCTCGCTGCCAGGATG 6054829 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | || || |||||| || |||| ||||| ||||| || | | Sbjct 6054830 GCATAGTCAGGGTGCTTAGTCGTCAGGGTGGCAGCCGTTTCAGCCGCCAAAGTGTCCAGT 6054889 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || ||| | |||| ||||| || |||||||||| Sbjct 6054890 TCCACCGTCGTGACCCCGCTGTATAAGCCTTGGATTACTTTCATGG 6054935 >seq3 Length=132848913 Score = 113 bits (124), Expect = 6e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | |||||| ||||| || || |||||||| ||||| || || ||| Sbjct 126360979 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTCAGGCCAGGCATCAGTCCTCGTTTCTTG 126361038 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| |||||||| || || || || || Sbjct 126361039 AGCCAGAATATGGATGCAAAAGACCCAGAAAAGAAGATGCCTTCCACGGCGGCAAAGGCT 126361098 Query 46774 AC 46775 || Sbjct 126361099 AC 126361100 >seq4 Length=130910915 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || ||||| ||||| |||||||| || || | || || Sbjct 34847657 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 34847598 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| |||||||| || |||||||| || ||||| || ||||||||||| || || || Sbjct 34847597 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 34847538 Query 46774 AC 46775 || Sbjct 34847537 AC 34847536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928937140160