Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq15 152 5e-32 seq4 104 2e-17 seq1 82.4 8e-11 >seq15 Length=140412725 Score = 152 bits (168), Expect = 5e-32 Identities = 352/527 (67%), Gaps = 5/527 (1%) Strand=Plus/Minus Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | ||||||||| || | ||| ||| | | ||||| || || ||||||||| Sbjct 19879365 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATGTGGATGCAAAAGAACCAGAAAAGAAA 19879306 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 || || || || || ||||||| | | |||| ||| || || | | || Sbjct 19879305 ATTCCTTCCACGGCAGCAAAGGTGATGACACGTTCTCCACGTGGAGCCTCTTTGTCCCCC 19879246 Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748 ||||| | | ||| | |||| | |||||||| ||||| || || || || Sbjct 19879245 ATCCAGTGCAAGGCCCAGTCTGCCTCCTTCTTTACACAAGGCATTGTCTCGATGGCATTG 19879186 Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808 |||||||| |||||| |||| | || || |||||||| || | ||||||||| Sbjct 19879185 AAGAGAAATTCGCTTTCTTTGGAATCTTTGATGTAAGTATCAATGAGGAGGCTATACATT 19879126 Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868 |||||||| || ||||| || ||||| || || ||||| ||||| | |||||| | | Sbjct 19879125 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGAGCTTCTGTAATC 19879066 Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928 |||| || | ||| | | | || ||||| | || || |||||||| || ||| Sbjct 19879065 TGAATTTCTTGGCTAAACCACTCCACCAAGTTTTCATCCACGATGCCATCACTTGCTGCA 19879006 Query 23929 AAGAAAG-CAAGAACATATTTTATAAAATGTCTTTCATCAG--TTGATAATTTTTTCCAA 23985 ||||||| ||||| || | ||||||| ||| || | || || || ||| ||| Sbjct 19879005 AAGAAAGCCAAGATGATGTGAAATAAAATATCTCTCCTTAGGCTTCAT--GGTTTCCCAG 19878948 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 | | ||| | || || | | || || ||| |||||||||| ||| || | Sbjct 19878947 TGTTGAATGCCCTTGGAGAGGCCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCTGCCTTC 19878888 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 |||||||| |||| || |||| | || || ||||| || || || Sbjct 19878887 TTATACATCTGCCAGATGTCATGGTATTTGATAGGAAAGATGACAAA 19878841 >seq4 Length=130910915 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || || || | |||||| ||||| || | ||| ||||| | |||| ||| || Sbjct 34847657 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCAGGCATAAGACCTCTTTTCTTT 34847598 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||||| Sbjct 34847597 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 34847538 Query 23653 AC 23654 || Sbjct 34847537 AC 34847536 >seq1 Length=274330532 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| ||| |||||| || |||| |||||||||||| ||||| Sbjct 179672009 GCGCACTGCAGCCCAGAACTCCTGGGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 179672068 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 ||||||||||||||| |||||| |||| Sbjct 179672069 GCTGGGATTACAGGCGCGCGCCACCGCGCC 179672098 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| ||| |||||| || |||| |||||||||||| ||||| Sbjct 218683071 GCGCACTGCAGCCCAGAACTCCTGGGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 218683130 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 ||||||||||||||| |||||| |||| Sbjct 218683131 GCTGGGATTACAGGCGCGCGCCACCGCGCC 218683160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521484004098200