Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq9 147 3e-30 seq1 95.1 2e-14 >seq9 Length=139512083 Score = 147 bits (162), Expect = 3e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||||||||| | || || |||||| || || || ||||| || ||||||||||| Sbjct 127853462 GTCTGGAACAGCCGTTCATCGTCCCATTCCGGGTGCTCCTGTTTAAGCACATCGCACACT 127853521 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 || || ||||||| |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 127853522 CTATTATGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 127853581 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || || || | || | || ||| || | || || |||||||| | Sbjct 127853582 ACCTCATGCCCCACGGCAAAGCGGAGGTGTTCAGGAGTGTGAGGCGGGTAGATCATCTCG 127853641 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 || || ||||||| | | || |||||||| ||||| ||||| |||| Sbjct 127853642 ACTTGAGTGTCTTTGGCTGTCGGAGGATACATCTCACCATCAATTATCT 127853690 Score = 129 bits (142), Expect = 8e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||| ||||||| ||||| || || |||||| | ||| ||| | || Sbjct 127854823 TCTTACCCCATGGCCCTGTCCTTTGGTGAAAGCTGGTCCTCGCTTCTGATCTGTCTTGAA 127854882 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 127854883 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 127854942 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| | || | ||||| |||||||||||| Sbjct 127854943 AGGGATGAACTTTCTTCTTAGAAGTAATTTTTCCACAAC 127854981 Score = 116 bits (128), Expect = 5e-21 Identities = 208/304 (68%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || || || || || || || | |||| ||||||||||| | Sbjct 127851952 GAACACTGAATGAGGTAAAAGGGCAGCCTTTCACATTATTGCAGATGAGAGACTGAATCG 127852011 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || || || |||||||||||| Sbjct 127852012 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTACTAGGCTTCCAGTACT 127852071 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || ||||| || |||| || ||||| | |||||| || || || || | Sbjct 127852072 CAGGAGAACAGATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGGGCTCCAGCTTCTA 127852131 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||| | || || |||||||| |||| | | | |||| Sbjct 127852132 CCATGGTCTCCCCAAAGATGGCATCTGGGCGAGGCTTTTCTACCAGAAGGGCAGGATACA 127852191 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||| || || || || | || ||||| || ||||| |||| Sbjct 127852192 GCTCCATGGCATCAATGTCACCATAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 127852251 Query 8583 CTGT 8586 |||| Sbjct 127852252 CTGT 127852255 >seq1 Length=274330532 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || || ||||| || |||| | || |||||| | || || || |||| | |||| Sbjct 262468170 GTACTCACCCCGTGGCCCAACGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTCT 262468113 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 | || |||||||| ||||| |||||| |||| ||||||||||| | ||||| |||||||| Sbjct 262468112 TGAAGAACTGGTGGGTGAAGTGTTGGGCAAAGAAGGCAAACATGAGGTTGGCGCCCTGGG 262468053 Query 9765 GATCGGGAGTGAAGGTCCTCCGAAGAAG 9792 | || || |||| ||||||| || || Sbjct 262468052 GGTCAGGTATGAACTTCCTCCGGAGTAG 262468025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716871306931520