Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sus_20scrofa_20[refseq_20GCF_5F000003025.6_202017-02-07] 613 sequences; 2,501,912,388 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 145 2e-29 seq14 141 2e-28 >seq12 Length=61602749 Score = 145 bits (160), Expect = 2e-29 Identities = 174/234 (74%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||||| |||| Sbjct 59172102 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 59172046 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| ||||| || || || || Sbjct 59172045 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT 59171988 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||||| || ||||| | ||||| Sbjct 59171987 TCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACTCT 59171928 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | | ||||| ||| |||| ||||| || || || ||||| ||| || | || || Sbjct 59171927 TTCTGATTACAACATCCAGAAAGAGTCCACCCTCCATCTGGTTCTGCGTCTGAG 59171874 Score = 143 bits (158), Expect = 6e-29 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 59171863 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 59171806 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| ||||| || ||||| || || || ||||||| Sbjct 59171805 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGC 59171746 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 59171745 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 59171686 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| || || || ||||| ||| || | || || Sbjct 59171685 TCCAGAAAGAGTCCACTCTCCATCTGGTTCTGCGTCTGAG 59171646 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 59171635 CAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 59171578 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| ||||| || ||||| || || || ||||||| Sbjct 59171577 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 59171518 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 59171517 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 59171458 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || ||||| || Sbjct 59171457 TCCAGAAAGAGTCCACTCTCCATCTGGT 59171430 >seq14 Length=141755446 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28258192 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28258249 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 28258250 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGC 28258309 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28258310 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28258369 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28258370 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28258410 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28258648 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28258705 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 28258706 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGC 28258765 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28258766 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28258825 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28258826 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28258866 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28259332 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28259389 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 28259390 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGC 28259449 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28259450 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28259509 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28259510 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28259550 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28259788 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28259845 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 28259846 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGC 28259905 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28259906 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28259965 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28259966 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28260006 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28258420 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28258477 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 28258478 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGC 28258537 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28258538 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28258597 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28258598 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28258638 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28258876 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28258933 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 28258934 ACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGC 28258993 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28258994 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28259053 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28259054 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28259094 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28259104 CAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28259161 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 28259162 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAGC 28259221 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28259222 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28259281 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28259282 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28259322 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28259560 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28259617 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 28259618 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 28259677 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28259678 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28259737 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28259738 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28259778 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28260016 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28260073 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 28260074 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 28260133 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28260134 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28260193 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28260194 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28260234 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28260244 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28260301 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 28260302 ACACCATCGAGAATGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 28260361 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28260362 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28260421 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 28260422 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTCCGCCTCAGA 28260462 Score = 131 bits (144), Expect = 4e-25 Identities = 155/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| || ||||| || ||| Sbjct 28260472 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAAGTGGA--GCCCAGCG 28260529 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 28260530 ACACCATCGAGAATGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 28260589 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 28260590 AGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 28260649 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || ||||| |||| Sbjct 28260650 TCCAGAAGGAGTCCACCCTGCA-CTTG 28260675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203721745819922