Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1971 271 9e-68 seq2230 167 3e-36 seq3161 134 2e-26 seq4569 102 1e-16 seq36110 89.7 6e-13 >seq1971 Length=167910 Score = 271 bits (300), Expect = 9e-68 Identities = 420/599 (70%), Gaps = 3/599 (1%) Strand=Plus/Minus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| ||||||| || || || || ||||||| |||||||||||| ||||| | ||| Sbjct 91546 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCA 91487 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| ||||| |||| ||| || || || || || ||||| ||||| || ||||| Sbjct 91486 TTGGAAAATGTGAGGCCGGCCATCAGTCCTCGTTTCTTGAGCCACAATATAGATGCAAAA 91427 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---A 24296 || ||||||||||| |||||||| |||| ||||||| | | |||||| || | Sbjct 91426 GAACCAGAAAAGAAGATTCCTTCCGCTGCGACAAAGGCTACGACAGGTTCTCCGTACGTA 91367 Query 24297 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 | | |||| | |||| |||||||| ||| ||| ||||||||||||| | Sbjct 91366 GCCTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACACAAGGCACT 91307 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| | ||||| ||||| | | |||| || |||||||| || || ||||| Sbjct 91306 GTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATG 91247 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | ||||| | |||||| |||| |||||||| | ||| ||||| || || |||||| | Sbjct 91246 AGGAGACTGTCCATTTCACAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAA 91187 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | || || |||||||| |||||| | || || || | | |||||||| ||||| Sbjct 91186 CGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCCAGTTTTCATTTACTATG 91127 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 | ||||| |||||| | || |||| ||| | ||| || | || || || | Sbjct 91126 CTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCCTCAGGCTTC 91067 Query 24597 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 || | ||| | | || || || || | ||||| || || ||||||| || || Sbjct 91066 AGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAA 91007 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | ||| || || |||||||| | ||| | ||| |||||| | ||||| || ||||| Sbjct 91006 GACTCCGCTTTCTTATACATCTGCCAAACATCACGATATTCGACAGGAAAGATGACAAA 90948 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | ||| |||||||| ||||| |||||||| || || || |||| Sbjct 88602 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 88543 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 88542 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 88483 Query 24277 C 24277 | Sbjct 88482 C 88482 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 86614 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 86555 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 86554 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 86509 >seq2230 Length=225668 Score = 167 bits (184), Expect = 3e-36 Identities = 248/347 (71%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| ||||||| || || || || ||||||| |||||||||||| ||||| | || Sbjct 225104 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGATCA 225045 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| ||||| |||| ||| || || || || || ||||| ||||| || ||||| Sbjct 225044 TTGGAAAATGTGAGGCCGGCCATCAGTCCTCGTTTCTTGAGCCACAATATAGATGCAAAA 224985 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---A 24296 || ||||||||||| |||||||| |||| ||||||| | | |||||| || | Sbjct 224984 GACCCAGAAAAGAAGATTCCTTCCGCTGCGACAAAGGCTACGACAGGTTCTCCGTACGTA 224925 Query 24297 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 | | |||| | |||| | |||||| ||| ||| |||||||| |||| | Sbjct 224924 GCCTCTTTGTCTTCGATCCGGCGCAAGGTCCAATCTGCCGCCTTCTTTACACAGGGCACT 224865 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| | |||| | ||| ||| |||| || |||||||| || | ||||| Sbjct 224864 GTCTCACTGACATTGATGAG-GAGTCCCTTTCTTTGGAATCTTTAATGTAGTTGTCAAT- 224807 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 24463 | ||||| | ||||| | ||| |||||||| | ||| ||||| || Sbjct 224806 GAGAGACTGTCCATTT-CACATGTATGTTTTCCACGGCAATTTGGAA 224761 >seq3161 Length=206284 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 166548 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 166489 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 166488 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 166429 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 166428 CTGTTTCTTATACCATA 166412 Score = 105 bits (116), Expect = 8e-18 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || || | |||||| || || || || || || | Sbjct 161952 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 161893 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||||| |||||| | ||| || ||| | || ||||| || | Sbjct 161892 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCCGGACTCTCAAAAGGGT 161833 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 | | | |||||||| |||||||| | ||||| || ||||| || || || | ||| Sbjct 161832 ACCTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 161775 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| |||||||||||||| | || || ||||| || || || || || | Sbjct 143138 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 143079 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 143078 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 143019 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 143018 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 142973 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 156256 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 156197 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 156196 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 156137 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 156136 AGGCTCCAGGTAAAT 156122 >seq4569 Length=138791 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 31091 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 31032 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 31031 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 30973 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| ||||||||||||||||||||||| || || | || |||||| Sbjct 26730 AAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 26671 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634 || || || |||| | | || || ||||| | | || ||| || |||| ||| || Sbjct 26670 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 26615 >seq36110 Length=3262 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 21946 TTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACATT 22005 |||||||||| | | ||| | | || ||||| || |||| ||| ||| | || |||| Sbjct 1806 TTCTGGATAAGAAACCTGTTCACAAATGAGCTGTGCAATTCAATCACCCTT-TTGACATC 1864 Query 22006 AAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCGTC 22065 | |||| | ||| ||| ||||| || | || || | |||||| ||||||||||| || Sbjct 1865 ACATGTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTCATC 1924 Query 22066 TATTACACCGCCTCCTATATC 22086 ||| |||| | |||||||||| Sbjct 1925 TATGACACAGACTCCTATATC 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591936301413360