Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3161 111 1e-19 seq24761 104 2e-17 seq2586 95.1 1e-14 seq4730 86.0 6e-12 >seq3161 Length=206284 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || ||||| ||||| || || || ||||| || || ||||| Sbjct 157591 ACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 157532 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 157531 CCTAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 157472 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 157471 CCTGTCTCTGTCTGAGACTCAATGATGGC 157443 >seq24761 Length=36067 Score = 104 bits (114), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||||| ||||| |||||||| || || ||||| |||| |||||||| || | Sbjct 10754 TGCAGATTTTCGTGAAGACCCTGACAGG-AAGACCATCACTCTCGAGGTTGAACCCTCGG 10696 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 | | | |||| || || | || |||||||||||| | | || ||||||| Sbjct 10695 ATACAATAGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTTCCCCTGACCAGC 10636 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372 || | || || || |||||||| || ||||||| | | | ||| || || || ||| Sbjct 10635 AGAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTTTGACTACAAC 10577 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| | || ||||||||| | || | ||||| Sbjct 10576 ATTCAAAAGGGGTCCACTCTTCATATTGTGTTGAGACT 10539 >seq2586 Length=172570 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||||| ||||| | ||| || || || ||||| |||| || ||||| || | Sbjct 46898 TGCAGATTTTCGTGAAGACCCAGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGG 46839 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 | || |||| || || | || |||||||||||| | || || ||||||| Sbjct 46838 ATGCAGTAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGC 46779 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372 | | || || || |||||||| || ||||||| | | | ||| || || || ||| Sbjct 46778 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTACAAC 46720 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || ||||||||||| || Sbjct 46719 ATTCAGAAGGAGTCCACTCTTCATCTTGT 46691 >seq4730 Length=198489 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| ||||| || ||||| ||||| || || || |||| |||| || ||||| Sbjct 50816 AACATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCGTCACTCTCGAGGTCGAACCC 50875 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | || | || || | || |||||||||||| | || || ||| Sbjct 50876 TCGGATACGATAGAGAATGTAAAGGTCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 50935 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | ||| ||| || || | Sbjct 50936 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACT-TG---GACCA 50990 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||| |||| | || || ||||||||||| || | ||||| Sbjct 50991 CAACACTCAAGAGGAGTCCACTCTTCATCTTGTGTTGAGACT 51032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444425997151440