Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1971 250 3e-61 seq2230 161 1e-34 seq3161 131 2e-25 seq6328 125 9e-24 seq4569 98.7 1e-15 >seq1971 Length=167910 Score = 250 bits (276), Expect = 3e-61 Identities = 415/599 (69%), Gaps = 3/599 (1%) Strand=Plus/Minus Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 ||||| ||||||| || || || || ||||| | |||||||||||| ||||| | ||| Sbjct 91546 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCA 91487 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 || ||||| ||||| |||| ||| || || || || || ||||| ||||| || || || Sbjct 91486 TTGGAAAATGTGAGGCCGGCCATCAGTCCTCGTTTCTTGAGCCACAATATAGATGCAAAA 91427 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---A 33743 || || ||||||||||||||||| |||| ||||||| | | ||||| || | Sbjct 91426 GAACCAGAAAAGAAGATTCCTTCCGCTGCGACAAAGGCTACGACAGGTTCTCCGTACGTA 91367 Query 33744 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803 | | |||| | |||| |||||||| ||| ||| ||||||||||||| Sbjct 91366 GCCTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACACAAGGCACT 91307 Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 || || ||||||| ||||| | | |||| || |||||||| ||||| || || Sbjct 91306 GTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATG 91247 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 | ||||| | |||||| |||| |||||||| | ||| || || || || |||||| | Sbjct 91246 AGGAGACTGTCCATTTCACAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAA 91187 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33983 | || || |||||||| |||||| | || || || | | |||||||| ||||| Sbjct 91186 CGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCCAGTTTTCATTTACTATG 91127 Query 33984 CCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 34043 | |||||| |||||| | || |||| ||| | ||| || | || || || | Sbjct 91126 CTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCCTCAGGCTTC 91067 Query 34044 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103 || | ||| | | || || || || | ||||| || || ||||||| || || Sbjct 91066 AGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAA 91007 Query 34104 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | ||| || || |||||||| | ||| | ||| |||||| || || || || ||||| Sbjct 91006 GACTCCGCTTTCTTATACATCTGCCAAACATCACGATATTCGACAGGAAAGATGACAAA 90948 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || |||| Sbjct 88602 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 88543 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| ||||||||||||| Sbjct 88542 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 88483 Query 33724 C 33724 | Sbjct 88482 C 88482 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 86614 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 86555 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || || |||||||| |||||| Sbjct 86554 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 86509 >seq2230 Length=225668 Score = 161 bits (178), Expect = 1e-34 Identities = 452/684 (66%), Gaps = 16/684 (2%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 33292 ||| |||||| |||| || | ||| ||| ||| || ||| | |||||||| | Sbjct 225437 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACGTCACTCCCATCCT 225378 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 || || | || || | || | || || ||||| || |||||| ||| |||| || Sbjct 225377 CTGATACTTGCCTACTCTCTTCCCAAAGAAGTTAGTCTTCCCTTCCG-TGAAATATCCTC 225319 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 ||| || ||||| ||||| || || ||| || |||| |||| || || | Sbjct 225318 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCACCTCCAGCATAAG 225259 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 ||| ||||| |||||||| | || ||||||| | |||||||| || ||||| | Sbjct 225258 TCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCAATTCATCCCGATGAGCTC 225199 Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAA 33532 |||| || || | || || || || ||||| || | ||| | || || Sbjct 225198 CACTGTCAGGGCTTCTGTGAGGAACTCGTGTTCTATCCTAGCTGCACTGACGATTATTTC 225139 Query 33533 TCTAACGGTTTCTTCACTCG---GTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | | || | ||| | | || || |||| | ||||| ||||||| || || || Sbjct 225138 TTTGAC--TCTCTGCTC-CGAATGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAA 225082 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 || ||||| | |||||||||||| ||||| | || || ||||| ||||| |||| ||| Sbjct 225081 GTCACAGTGTAAACCCTCGTCTCTGCTAATAAGATCATTGGAAAATGTGAGGCCGGCCAT 225022 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || || || || || ||||| ||||| || || || || || ||||||||||||||||| Sbjct 225021 CAGTCCTCGTTTCTTGAGCCACAATATAGATGCAAAAGACCCAGAAAAGAAGATTCCTTC 224962 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 33766 |||| ||||||| | | ||||| || | | | |||| | |||| Sbjct 224961 CGCTGCGACAAAGGCTACGACAGGTTCTCCGTACGTAGCCTCTTTGTCTTCGATCCGGCG 224902 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 | |||||| ||| ||| |||||||| |||| || || || |||| | ||| | Sbjct 224901 CAAGGTCCAATCTGCCGCCTTCTTTACACAGGGCACTGTCTCACTGACATTGATGAG-GA 224843 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 || |||| || |||||||| || | || || | ||||| | ||||| | ||| Sbjct 224842 GTCCCTTTCTTTGGAATCTTTAATGTAGTTGTCAAT-GAGAGACTGTCCATTT-CACATG 224785 Query 33887 AATGTTTTCAATGGCCATCTGAAA 33910 |||||||| | ||| || || || Sbjct 224784 TATGTTTTCCACGGCAATTTGGAA 224761 >seq3161 Length=206284 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 166548 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 166489 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 166488 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 166429 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 166428 CTGTTTCTTATACCATA 166412 Score = 109 bits (120), Expect = 7e-19 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || | || ||| || || || || || || | Sbjct 161952 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 161893 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| | ||| || ||||| || ||||| || | Sbjct 161892 AATAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCCGGACTCTCAAAAGGGT 161833 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 | | | |||||||| ||||| || | ||||| || ||||| || || || | ||| Sbjct 161832 ACCTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 161775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 156256 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 156197 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 156196 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 156137 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 156136 AGGCTCCAGGTAAATAGC 156119 >seq6328 Length=162257 Score = 125 bits (138), Expect = 9e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | ||| ||| | |||||||| || ||||||||||||| ||| Sbjct 130588 GTTACTTTCTATGATGTGTATATTGTTCTGCAAGCTTTTATACTGACTACTGCAGTATTT 130647 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||| ||||||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 130648 CTTGGCTTGACTGTATGTACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 130706 Score = 100 bits (110), Expect = 4e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 117451 TGCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 117510 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 117511 ATCCGAATGG 117520 >seq4569 Length=138791 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| || ||||| ||||| || || | || || Sbjct 31091 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 31032 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 31031 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 30973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||| ||||||||||||||||| || || | || |||||| Sbjct 26730 AAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 26671 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 || || || |||| | | || || ||||| | | || ||| || |||| ||| || Sbjct 26670 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 26615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627923762094960