Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2230 206 2e-48 seq1971 174 1e-38 seq4569 120 3e-22 seq3161 102 8e-17 >seq2230 Length=225668 Score = 206 bits (228), Expect = 2e-48 Identities = 328/464 (71%), Gaps = 5/464 (1%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAA-TTAGTCTTACCTTCTA 11387 ||| |||||| | ||||| | | |||| || | | ||| || |||||||| ||||| Sbjct 225389 CACTCCCATCCTCTGATACTTGCCTACTC-TCTTCCCAAAGAAGTTAGTCTTCCCTTCC- 225332 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||||||| ||| ||||| | ||| |||| || || | |||| | Sbjct 225331 GTGAAATATCCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCA 225272 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | ||| ||||| |||||||| | ||||| ||| ||| ||||||| Sbjct 225271 CCTCCAGCATAAGTCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCAATTCA 225212 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || ||||| | | || |||| | ||||| | |||||| || | ||| Sbjct 225211 TCCCGATGAGCTCCACTGTCAGGGCTTCTGTGAGGAACTCGTGTTCTATCCTAGCTGCAC 225152 Query 11568 CAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 | |||||| | || || | || || || |||| | ||||| ||||| Sbjct 225151 TGACGATTATTT-CTTTGACTCTCTGCTCCGAATGTTTGTGTAGCAGGTGTTTGAACATC 225093 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||||| ||||| |||||||| |||||||| || || || ||||| |||||||| Sbjct 225092 AGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGATCATTGGAAAATGTG 225033 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | |||| ||||| ||||||||| || | ||| ||||||| ||||| || ||||||||| Sbjct 225032 AGGCCGGCCATCAGTCCTCGTTTCTTGAGCCACAATATAGATGCAAAAGACCCAGAAAAG 224973 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790 || ||||| ||| | || |||| ||||| || |||||| || Sbjct 224972 AAGATTCCTTCCGCTGCGACAAAGGCTACGACAGGTTCTCCGTA 224929 >seq1971 Length=167910 Score = 174 bits (192), Expect = 1e-38 Identities = 310/448 (69%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 11615 TGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCA 11674 ||||| ||||| | || ||||| ||||| |||||||| |||||||| || || |||||| Sbjct 91546 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCA 91487 Query 11675 TTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAAT 11734 || |||||||| | |||| ||||| ||||||||| || | ||| ||||||| ||||| Sbjct 91486 TTGGAAAATGTGAGGCCGGCCATCAGTCCTCGTTTCTTGAGCCACAATATAGATGCAAAA 91427 Query 11735 GAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA 11792 |||||||||||||| ||||| ||| | || |||| ||||| || |||||| || || Sbjct 91426 GAACCAGAAAAGAAGATTCCTTCCGCTGCGACAAAGGCTACGACAGGTTCTCCGTACGTA 91367 Query 11793 -CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATT 11851 ||| ||| |||| ||||||||| || ||| ||||| || || | Sbjct 91366 GCCTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACACAAGGCACT 91307 Query 11852 GTTTCTATAGCGTTAAATA--AATGCATTTTTTCTATATTATCTCTTACATATGTATCTA 11909 || || | || || || | ||| | ||||| | |||| | | || || || | Sbjct 91306 GTCTCACTGGCATTGAAGAGGAATTC--CCTTTCTTTGGAATCTTTAATGTAAGTGTCAA 91249 Query 11910 TTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAAC 11969 | | | ||| | |||||| |||| || ||||||| || ||||| || ||||||||| Sbjct 91248 TGAGGAGACTGTCCATTTCACAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAAT 91189 Query 11970 ATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAA 12029 | || || || | | ||| || || || | ||| | | || |||||||| | Sbjct 91188 AACGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCCAGTTTTCATTTACTA 91129 Query 12030 TACCATCACTAGATGCAAAAAATGCTAG 12057 | | |||||| | |||| | || || || Sbjct 91128 TGCTATCACTTGCTGCAGAGAAAGCCAG 91101 Score = 138 bits (152), Expect = 1e-27 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| |||||||| | |||||||||| |||||||||||| Sbjct 88600 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 88541 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 88540 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 88481 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 88480 ACGACACGTTCTCC 88467 >seq4569 Length=138791 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 31093 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 31034 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 31033 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 30974 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 30973 CCACCACCCTTTCCCC 30958 Score = 86.0 bits (94), Expect = 6e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 |||||| || |||||| | || || ||||||| ||||| ||||| ||||| |||| | Sbjct 27607 TTTTCT-TAGGATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACA 27549 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 ||||| || |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 27548 TTTTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 27492 >seq3161 Length=206284 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || || || ||||| |||||||| Sbjct 166548 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 166489 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 166488 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 166429 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 166428 CTGTTTCTTATACCAT 166413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467115963496080