Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq4260 150 2e-31 seq4304 120 3e-22 seq3296 100 2e-16 seq3042 100 2e-16 >seq4260 Length=133197 Score = 150 bits (166), Expect = 2e-31 Identities = 131/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| || || || ||||||||||||||||||||||| | Sbjct 112049 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTAAAGG 111990 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 111989 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 111930 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | | || || || || || ||||| Sbjct 111929 CCACGTAGAACTGGCAAAGGGCATGGCACGGGGGTAGGGCCAT 111887 >seq4304 Length=228172 Score = 120 bits (132), Expect = 3e-22 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| || || || ||||| ||||| ||| |||| || || ||||||| |||| ||| Sbjct 2886 GTAAATATGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 2827 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| || || || ||||| |||||||||||||| || | || | |||||| | Sbjct 2826 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACTCAGGCCCCT 2767 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAG 21097 ||| | ||| |||||||||||| ||||||||| Sbjct 2766 GTCTCCTGACTTCTGGTACAGCT-GCAGGACAG 2735 >seq3296 Length=145999 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || |||| || || ||||| | | Sbjct 31318 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGCACTCCCTGTGGAGGTTCCTTGAGT 31259 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || ||||||||||||||| | ||| || ||||| || || | ||| Sbjct 31258 TCTCTGCTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCTCTGGAAAGGAG 31199 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | || || | || | Sbjct 31198 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGTTGTG 31139 Query 3143 GTCATTTTCTGAAAATAC 3160 |||||| | || |||||| Sbjct 31138 GTCATTCTTTGGAAATAC 31121 >seq3042 Length=197541 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || ||||| || || ||||| | | Sbjct 153712 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 153771 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||| | | | ||| || ||| | || || ||||| Sbjct 153772 TCTCTACTGAGAACTATATTAATTCTGTCCTCTAAAGGTCGATTCGTCTCTGGAATGGAG 153831 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | || || | || | Sbjct 153832 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAAGTTGTG 153891 Query 3143 GTCATTTTCTGAAAATAC 3160 |||||| | || |||||| Sbjct 153892 GTCATTCTTTGGAAATAC 153909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426521851269360