Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1971 259 7e-64 seq2230 167 3e-36 seq3161 125 1e-23 seq4569 98.7 1e-15 >seq1971 Length=167910 Score = 259 bits (286), Expect = 7e-64 Identities = 417/599 (70%), Gaps = 3/599 (1%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||||| ||||||| || || || || ||||| | |||||||||||| ||||| ||||| Sbjct 91546 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCA 91487 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||||| ||||| |||| ||| || || || || || ||||| ||||| || ||||| Sbjct 91486 TTGGAAAATGTGAGGCCGGCCATCAGTCCTCGTTTCTTGAGCCACAATATAGATGCAAAA 91427 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || |||||||||||||||||||| ||||| ||||||| || | ||||| || | Sbjct 91426 GAACCAGAAAAGAAGATTCCTTCCGCTGCGACAAAGGCTACGACAGGTTCTCCGTACGTA 91367 Query 50125 G---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 | | |||| | |||| |||||||| ||| ||| ||||||||||||| Sbjct 91366 GCCTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACACAAGGCACT 91307 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 || || ||||||| ||||| | | |||| || |||||||| ||||| || || Sbjct 91306 GTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATG 91247 Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301 | ||||| | |||||| |||| |||||||| | ||| || || || || |||||| | Sbjct 91246 AGGAGACTGTCCATTTCACAATGTATGTTTTCCACGGCAATTTGGAAGCCATAGAAATAA 91187 Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATT 50361 | || || |||||||| |||||| | || || || | | |||||||| ||||| Sbjct 91186 CGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCCAGTTTTCATTTACTATG 91127 Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421 | ||||| |||||| | || |||| ||| | ||| | | || | || | Sbjct 91126 CTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCCTCAGGCTTC 91067 Query 50422 AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 50481 || | ||| | | || || || || | || || || || ||||||| || || Sbjct 91066 AGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAA 91007 Query 50482 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 | ||| || || |||||||| | ||| | ||| |||||| || || || || ||||| Sbjct 91006 GACTCCGCTTTCTTATACATCTGCCAAACATCACGATATTCGACAGGAAAGATGACAAA 90948 Score = 143 bits (158), Expect = 4e-29 Identities = 106/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || |||| Sbjct 88602 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 88543 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 88542 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 88483 Query 50102 CAAC 50105 | || Sbjct 88482 CTAC 88479 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 86614 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 86555 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || |||||||| |||||| Sbjct 86554 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 86509 >seq2230 Length=225668 Score = 167 bits (184), Expect = 3e-36 Identities = 248/347 (71%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||||| ||||||| || || || || ||||| | |||||||||||| ||||| || || Sbjct 225104 TGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGATCA 225045 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||||| ||||| |||| ||| || || || || || ||||| ||||| || ||||| Sbjct 225044 TTGGAAAATGTGAGGCCGGCCATCAGTCCTCGTTTCTTGAGCCACAATATAGATGCAAAA 224985 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 ||||||||||||||||||||||| ||||| ||||||| || | ||||| || | Sbjct 224984 GACCCAGAAAAGAAGATTCCTTCCGCTGCGACAAAGGCTACGACAGGTTCTCCGTACGTA 224925 Query 50125 G---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 | | |||| | |||| | |||||| ||| ||| |||||||| |||| Sbjct 224924 GCCTCTTTGTCTTCGATCCGGCGCAAGGTCCAATCTGCCGCCTTCTTTACACAGGGCACT 224865 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 || || || |||| | ||| ||| |||| || |||||||| || | || || Sbjct 224864 GTCTCACTGACATTGATGAG-GAGTCCCTTTCTTTGGAATCTTTAATGTAGTTGTCAAT- 224807 Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 50288 | ||||| | ||||| | ||| |||||||| | ||| || || || Sbjct 224806 GAGAGACTGTCCATTT-CACATGTATGTTTTCCACGGCAATTTGGAA 224761 >seq3161 Length=206284 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 166548 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 166489 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||||||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 166488 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 166429 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 166428 CTGTTTCTTATACCATA 166412 Score = 105 bits (116), Expect = 1e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| |||||||| || || || || ||||| ||| Sbjct 161950 TAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCATAA 161891 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | ||| || || | || ||||| || || Sbjct 161890 TAAATGGTTTCAAAGATCTGCTTATTCAATAATTGGGCCTCCGGACTCTCAAAAGGGTAC 161831 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | |||||||| |||||||| | ||||| || ||||| || || || | ||| Sbjct 161830 CTCATCAGAATAAAAGCGTCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 161775 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 156252 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 156193 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 156192 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 156133 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 156132 TCCAGGTAAATAGC 156119 >seq4569 Length=138791 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| || ||||| ||||| || || | || || Sbjct 31091 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 31032 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 31031 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 30972 Query 50104 AC 50105 || Sbjct 30971 AC 30970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716108992653480