Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1971 269 3e-67 seq2230 221 1e-52 seq4569 120 3e-22 seq3161 111 2e-19 >seq1971 Length=167910 Score = 269 bits (298), Expect = 3e-67 Identities = 463/667 (69%), Gaps = 4/667 (1%) Strand=Plus/Minus Query 18880 TGTTCTATATTTACTGCCTCTGAT-ATAATAGATACAACTCTATCTTCATTAGGAGGGTA 18938 |||||||| | ||||| | ||| || ||| | |||||| | || ||| || Sbjct 91612 TGTTCTATCCTAACTGCAT-TGACGATGATATCTTTAACTCTCTGCTCCGAAGGTTTGTG 91554 Query 18939 TAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTAT 18998 ||| || ||||| ||||||| || ||||| ||||| |||| ||||||||||| || || Sbjct 91553 TAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAAT 91494 Query 18999 CAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGA 19058 | |||||| |||||||| | || | ||||||||||| ||| || | ||| |||||||| Sbjct 91493 AAGTTCATTGGAAAATGTGAGGCCGGCCATCAGTCCTCGTTTCTTGAGCCACAATATAGA 91434 Query 19059 AGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC 19118 ||||| || ||||||||||| || ||||| |||| |||| || || | |||||| Sbjct 91433 TGCAAAAGAACCAGAAAAGAAGATTCCTTCCGCTGCGACAAAGGCTACGACAGGTTCTCC 91374 Query 19119 ATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACA 19178 || |||| || || | | |||| || |||||||| ||| ||| |||||||| Sbjct 91373 GTACGTAGCCTCTTTGTCTTCGATCCGGCGCAAGGCCCAATCTGCCGCCTTCTTTACACA 91314 Query 19179 TGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGC 19238 |||| |||||| | | ||| || || | | || | | |||||||| || | Sbjct 91313 AGGCACTGTCTCACTGGCATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGT 91254 Query 19239 ATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA 19298 || || | | ||||| |||||| |||| || ||||| | || || || || || || Sbjct 91253 GTCAATGAGGAGACTGTCCATTTCACAATGTATGTTTTCCACGGCAATTTGGAAGCCATA 91194 Query 19299 AAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATT 19358 ||| | | ||||| || ||||| ||||| | || | || ||| | |||||||| Sbjct 91193 GAAATAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCCAGTTTTCATT 91134 Query 19359 AACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC 19418 ||||| | |||||| |||||| | || || | ||| | | ||| | | || || Sbjct 91133 TACTATGCTATCACTTGCTGCAGAGAAAGCCAGAACACACGAAGTGAAACATCTCTCCTC 91074 Query 19419 TGAGGTTAATGTATT-CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCC 19477 | | || | | || ||| | | ||| || || || | || || || ||| |||||| Sbjct 91073 AG-GCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCC 91015 Query 19478 AAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATA 19537 | || |||| ||| ||||| |||||||| | ||| | ||||||||||| | |||||| | Sbjct 91014 AGAAGGAAGACTCCGCTTTCTTATACATCTGCCAAACATCACGATATTCGACAGGAAAGA 90955 Query 19538 TAACAAA 19544 | ||||| Sbjct 90954 TGACAAA 90948 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| |||||||| | || ||||||||||||| ||||| Sbjct 88602 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 88543 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 88542 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 88483 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 88482 CTACGACACGTTCTCC 88467 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| |||||||| Sbjct 92042 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 91986 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 91985 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 91926 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 91925 CTCCATAAAGTCAAATGGATTTTCTAC 91899 >seq2230 Length=225668 Score = 221 bits (244), Expect = 1e-52 Identities = 403/583 (69%), Gaps = 9/583 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| ||||||| Sbjct 225437 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACGTCA---CTCCCAT 225381 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| | | | ||||| || ||||||| ||||| || || || ||| ||| Sbjct 225380 CCTCTGATACTTGCCTACTCTCTTCCCAAAGAAGTTAGTCTTCCCTTCCG-TGAAATATC 225322 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||| ||||||||||||| ||| | | | || | || || | || | | Sbjct 225321 CTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCACCTCCAGCAT 225262 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || || |||| | || ||||||| | | |||||||| || || | Sbjct 225261 AAGTCTGTCTGCCACGAATTCGACGTACTGCTTCATCAAAGCGCAATTCATCCCGATGAG 225202 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAA 18907 | || | || || ||||| || || || |||||||| | |||| |||| || | Sbjct 225201 CTCCACTGTCAGGGCTTCTGTGAGGAACTCGTGTTCTATCCTAGCTGCA-CTGACGATTA 225143 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | ||||| | || | | || ||| || ||||| ||||||| || |||| Sbjct 225142 TTTCTTTGACTCTCTGCTCCGAATGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAA 225083 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||||||||| || || | ||||| |||||||| | || | || Sbjct 225082 AGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGATCATTGGAAAATGTGAGGCCGGCCA 225023 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||||||||| ||| || | ||| |||||||| ||||| || ||||||||||| || |||| Sbjct 225022 TCAGTCCTCGTTTCTTGAGCCACAATATAGATGCAAAAGACCCAGAAAAGAAGATTCCTT 224963 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | |||| |||| || || | |||||| || |||| || || | | |||| Sbjct 224962 CCGCTGCGACAAAGGCTACGACAGGTTCTCCGTACGTAGCCTCTTTGTCTTCGATCCGGC 224903 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 || | |||||| ||| ||| |||||||| |||| |||||| Sbjct 224902 GCAAGGTCCAATCTGCCGCCTTCTTTACACAGGGCACTGTCTC 224860 >seq4569 Length=138791 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| ||||||||||| ||| Sbjct 31091 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 31032 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 31031 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 30972 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 30971 ACCACCCTTTCCCC 30958 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 |||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || || Sbjct 47406 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTCTC 47347 Query 18732 CATAAAATCAAATGGATTTTT 18752 |||||||||||| |||||||| Sbjct 47346 CATAAAATCAAAGGGATTTTT 47326 >seq3161 Length=206284 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || ||||| ||||| ||||| || || Sbjct 166545 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 166486 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 166485 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 166426 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 166425 TTTCTTATACCATA 166412 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 168777 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 168718 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| ||||||||||| | | || Sbjct 168717 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTATGGTTT 168658 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 168657 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCCTCAGG 168609 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| ||||| || | | || Sbjct 147951 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAGAGAAGGTTG 147892 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 147891 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 147832 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 147831 ATATGCTGTGGTCTTTCA 147814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560418559917480