Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1971 178 1e-39 seq1777 125 6e-24 seq2230 93.3 3e-14 seq4569 82.4 6e-11 >seq1971 Length=167910 Score = 178 bits (196), Expect = 1e-39 Identities = 398/591 (67%), Gaps = 9/591 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| | |||||| ||| | ||||| ||||| || ||||| || | Sbjct 90948 TTTGTCATCTTTCCTGTCGAATATCGTGATGTTTGGCAGATGTATAAGAAAGCGGAGTCT 91007 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || || |||||||| || || || || | | || ||| | ||||| ||| || Sbjct 91008 TCCTTCTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCAC--TGGGAAGCCC 91065 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || | || | | ||| | || | ||| |||| || | ||| || || || Sbjct 91066 TGAAGCCTGAGGAGAGATGTTTCACTTCGTGTGTTCTGGCTTTCTCTGCAGCAAGTGATA 91125 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||||| |||||||| | ||| ||| || ||||||||||| |||| | ||||| Sbjct 91126 GCATAGTAAATGAAAACTGGGTGGAGCGGCTTAGCCAAGAAGTTCAGATTA-CGGAAGCC 91184 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || | ||| ||||| || ||||||||| | ||||| || |||| |||||| ||||||| Sbjct 91185 CGTTATTTCTATGGCTTCCAAATTGCCGTGGAAAACATACATTGTGAAATGGACAGTCTC 91244 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || || || || ||||| |||||| | || | | | | || ||||| | || Sbjct 91245 CTCATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTCCTCTTCAATGCCAGTGAG 91304 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT-AAATTCAA--AT 44113 ||||| ||| | || | ||||| |||||| | |||| || ||| | Sbjct 91305 ACAGTGCCTTGTGTAAAGAAGGCGGCAGATTGGGCCTTGCGCCGGATCGAAGACAAAGAG 91364 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | ||||||| | || || |||| | | |||||| || |||||||| || Sbjct 91365 GCTACGTACGGAGAACCTGTCGTAGCCTTTGTCGCAGCGGAAGGAATCTTCTTTTCTGGT 91424 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| | ||||| ||| | ||||||||||| ||||| | || | || ||||| Sbjct 91425 TCTTTTGCATCTATATTGTGGCTCAAGAAACGAGGACTGATGGCCGGCCTCACATTTTCC 91484 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||||| | || || | || || || ||||| || || ||||| ||| || Sbjct 91485 AATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTG 91535 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| | ||||| || ||||| ||||| || |||||||| Sbjct 86498 CGGTTTAGCCAAGAAGTTCAGATTA-CGGAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 86556 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 86557 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 86614 >seq1777 Length=234090 Score = 125 bits (138), Expect = 6e-24 Identities = 178/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 47201 CATTGGTTTTA-CAACGTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATT 47259 || |||||| | || ||| | || ||||||||| | || ||||| | || ||| | | Sbjct 204998 CAGTGGTTTCAGCAGTGTGCTACAGTTTTTAGGATTATAAGAAAACT--GGTAAATTGGT 204941 Query 47260 ATTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTG 47319 |||||| || || || |||| |||||||| | || || |||||||| ||| | | | Sbjct 204940 ATTTCTTGGATTGGATAATGTGGGAAAAACAACGTTGCTACACATGCTAAAAGATGACGG 204881 Query 47320 CATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCAT 47379 | | | || ||| | |||||||| || || ||| ||||||| ||||||||||| Sbjct 204880 ACTTGGACAACACGTCCCAATGTTACATCCCACTTCAGAAGAACTAACCATTGCTGGCAT 204821 Query 47380 AACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTA 47439 || |||| || |||||| | || |||||| ||||||| || ||| ||||| |||| || Sbjct 204820 GACCTTTACAACTTTTGATCTGGGTGGACACGTTCAAGCTCGAAGAGTGTGGAAAAACTA 204761 Query 47440 TTTTCATG 47447 ||| || Sbjct 204760 CCTTCCTG 204753 >seq2230 Length=225668 Score = 93.3 bits (102), Expect = 3e-14 Identities = 302/465 (65%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||||| | || || |||| | | |||||| || |||||||| || || ||||| Sbjct 224932 GGAGAACCTGTCGTAGCCTTTGTCGCAGCGGAAGGAATCTTCTTTTCTGGGTCTTTTGCA 224991 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| ||||| | || | || ||||| ||||| | Sbjct 224992 TCTATATTGTGGCTCAAGAAACGAGGACTGATGGCCGGCCTCACATTTTCCAATGATCTT 225051 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGA 44302 || || | || || || ||||| || || ||||| ||| || | | | | || | Sbjct 225052 ATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCT--GC 225109 Query 44303 GACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAA 44362 || | || | ||| ||| | | | ||| || | || |||| | ||||||| Sbjct 225110 TAC-ACAAACATTCGGAGCAGAGAGTCAAAGAAATAATCGTCAGTGCAGCTAGGATAGAA 225168 Query 44363 CAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATG 44422 || || || | ||| ||| | | || | | || || |||||| ||||||| Sbjct 225169 CACGAGTTCCTCACAGAAGCCCTGACAGTGGAGCTCATCGGGATGAATTGCGCTTTGATG 225228 Query 44423 AACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACAC 44482 || || || | |||| | | ||||| | | | |||| |||||| | | || Sbjct 225229 AAGCAGTACGTCGAATTCGTGGCAGACAGACTTATGCTGGAGGTGGGTT----TTAGCAA 225284 Query 44483 TATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAAC 44538 | || ||| |||| || ||||| |||||||| ||||||| |||||| || || Sbjct 225285 GGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAGGATATTTC-ACGGAAGGGAAGAC 225343 Query 44539 AAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583 ||||| |||| || | || || | |||||| | ||||| || Sbjct 225344 TAACTTCTTTGGGAAGAGAGTAGGCAAGTATCAGAGGATGGGAGT 225388 >seq4569 Length=138791 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||| Sbjct 23018 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCC 23077 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 23078 TCCTTCTGGACAGCAGAAGAGGT 23100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396290743094785