Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tursiops_20truncatus_20[genbank_20GCA_5F000151865.3_202012-01-02] 240,557 sequences; 2,551,401,796 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq6540 196 4e-45 seq3296 190 2e-43 seq6538 174 1e-38 seq3042 158 1e-33 seq17760 118 9e-22 >seq6540 Length=125837 Score = 196 bits (216), Expect = 4e-45 Identities = 197/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 77794 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 77853 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| ||||| | |||| |||||||| || ||||| || || || || || || ||| Sbjct 77854 ATCACCTTTAGCCAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAAC 77913 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 77914 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 77973 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 |||||||| |||||||| | || || || ||||| ||||||||||| ||| |||||| Sbjct 77974 GAAGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCATGAATAGCC 78033 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 78034 TGCCTCACTCTCTTTG 78049 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 1422 ACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCT-ACAAGTGTT-TATTTA 1479 || || ||||||||||| || || ||||| ||||||||||| | ||||||| | || | Sbjct 78426 ACCATTACCTTCTGGAATACCACCTTGGAAGATGAAGGGTGTTTACAAGTGACCTCTTCA 78485 Query 1480 ACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCTTTTTG 1530 | || ||||| ||||||||||| |||||||||| || || || || |||| Sbjct 78486 ATACCTTTGGTTCTGGGAAGATCTCAGGAATAGCCTGCCTCACTCTCTTTG 78536 >seq3296 Length=145999 Score = 190 bits (210), Expect = 2e-43 Identities = 382/557 (69%), Gaps = 16/557 (3%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || ||||| || | || |||||||| || || || || | ||| Sbjct 31040 CTAAACTGCATCATCGCTGTGTCCCAGAACATGGGCATCGGCAAGAATGGGGACCTG--- 31096 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||| || || | ||||||| | |||| |||| |||||| | | ||||| Sbjct 31097 --GCCCCCGCTCAGGAATGAATACAGGTATTTCCAAAGAATGACCACAACCTCTTCAGTA 31154 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || ||| ||| | | Sbjct 31155 GAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTC-CTTTCCAG-AGA 31212 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || |||||||| ||| | |||||||| ||| | || || || || | Sbjct 31213 AGAATCGACCTTTAAAGAACAGAATTAATATAGTTCTCAGCAGAGAACTCAAGGAACCTC 31272 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGA- 2433 ||| || | || ||| |||| |||||| | ||| | || || ||| | || | Sbjct 31273 CACAGGGAGTGCATTTTCTTGCCAAAAGTCTGGATGATGC-CTTAAAACTCACCGAGCAA 31331 Query 2434 CCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAG 2493 |||||||||| | | | ||||| | | |||||||| | || || || ||||| || || Sbjct 31332 CCAGAATTAACAAATAAAGTGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTACAAG 31391 Query 2494 GAGAGCATTA-CAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATT 2552 || || | |||| | || | | | || ||| | |||||||| |||| |||| Sbjct 31392 GAAGCCAGGAGCAAG-CCAGGCCATCTTAGTCTATTTGTGACAAGGATCATGCAGGAATT 31450 Query 2553 TGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612 |||| |||| ||| || ||||||||| || | ||||||||| || | |||| Sbjct 31451 TGAAGGTGACACAATTTTTCCAGAAATTGATTTGGAAAAATACAAATTCCTCCCAGAATA 31510 Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATA 2672 |||||| ||||| |||| || || || || || || |||| |||||||||| |||| Sbjct 31511 TCCAGGGGTTCCTTCTGATGTCCAGGAGGAGAAAGGCATTAAGCACAAATTTGAAGTATA 31570 Query 2673 TGaaaaaaaaaCATAAT 2689 |||||| || | |||| Sbjct 31571 TGAAAAGAACAATTAAT 31587 >seq6538 Length=202454 Score = 174 bits (192), Expect = 1e-38 Identities = 361/526 (69%), Gaps = 15/526 (3%) Strand=Plus/Plus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || |||||||| | || || || | ||||| ||||| | || | ||||||| | Sbjct 67729 AACATGGGCATCAGCAAGAACGGGGACCTGCCCTGGCCCTCGCTCAGGAATGAATACAGG 67788 Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283 |||| || | |||||| | | ||||| || ||||||||| | || |||||| Sbjct 67789 TATTTCCAGAGAATGACCACAACCTCTTCAGTAGAAGGTAAACAGAATTTGGTGATTATG 67848 Query 2284 GGAAGAAAGACATGGTTTTCACTTC---CCATTAAAAGCA--GGCCTTTGAACAACAGAA 2338 || || || || ||||| | ||| ||| | ||| | | ||||| | |||||| Sbjct 67849 GGTAGGAAAACCTGGTTCGCCATTCATTCCAG-AGAAGAATCGACCTTTAAGGGACAGAA 67907 Query 2339 TAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAA 2398 | || | ||||||| |||| | || || || || |||| || ||||| ||| |||| | Sbjct 67908 TTAACATAGTTCTCATTAGAGAACTCAAGGAACCTCCACAGGGAGCTCATTTTCTTGCCA 67967 Query 2399 AAAGTATAGATCACGCTCTGGAAATTATAAT-AG-GACCAGAATTAAAAGACAGGGTGGA 2456 ||||| | ||| |||| || ||| | || | || |||||||||||| | | | ||||| Sbjct 67968 AAAGTCTGGATGACGC-CTTAAAACT-TACTGAGCGACCAGAATTAACAAATAAAGTGGA 68025 Query 2457 TAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCA 2515 | | |||| ||| | | || || ||||| ||| |||| || | |||| | || Sbjct 68026 CATGGTTTGCATAGTGGCGGGCAGTTCTGTTTATAAGGAAGCCACGAACAAGC-CAGGCC 68084 Query 2516 AACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAG 2575 | | | || || | |||||||| |||| |||||||| |||| |||| || ||| Sbjct 68085 ACCTTAGACTATTCGTGACAAGGATCATGCAGGAATTTGAAAGTGACACATTTTTTCCAA 68144 Query 2576 AAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGC 2635 ||||| || | ||||| |||| | | |||| ||||||||||| |||| ||| | Sbjct 68145 AAATTGATTTGGAAAAATATAAACTTATCCCAGAATATCCAGGTGTTCTTTCTGACGTCC 68204 Query 2636 AAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 | || || || || |||| ||||||||||| |||||||||| || Sbjct 68205 AGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAA 68250 >seq3042 Length=197541 Score = 158 bits (174), Expect = 1e-33 Identities = 314/462 (68%), Gaps = 5/462 (1%) Strand=Plus/Minus Query 2194 CTGCCATGGCCTCCT-CTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTC 2249 ||||| |||| |||| || | ||||||| | |||| |||| |||||| | |||| Sbjct 153941 CTGCCCTGGC-TCCTGCTCAGGAATGAATACAGGTATTTCCAAAGAATGACCACAACTTC 153883 Query 2250 TTCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCC 2309 ||| || ||||||||| | || |||||||| || ||||| ||||| || |||| Sbjct 153882 TTCAGTAGAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC 153823 Query 2310 CATTAAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGA 2369 | | | ||||| | ||||||| ||| | |||||||||||| | || || || Sbjct 153822 AGAGACGAATCGACCTTTAGAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGA 153763 Query 2370 GCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAAT 2429 || |||| || ||||| ||| |||| |||||| | ||| | || | || |||| Sbjct 153762 ACCTCCACAGGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAAAACTTATTGA 153703 Query 2430 AGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTA 2489 ||||||||||| | | | ||||| | | |||||||| | || || || || || Sbjct 153702 GCAACCAGAATTAACAAATAAAGTGGACATGGTTTGGATAGTGGGACACAGTTCAGTTTA 153643 Query 2490 TGAGGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAA 2549 |||| ||| | || | || | | | || ||| | |||||||| |||| | Sbjct 153642 CAAGGAAGCCATGAACAGGCCAGGCCATCTGCGACTATTTGTGACAAGGATCATGCAGGA 153583 Query 2550 ATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGA 2609 ||||||| |||| |||| || ||||||| | || | ||||| |||| || | || Sbjct 153582 ATTTGAAAGTGACACATTTTTTCCAGAAACTGATTTGGAAAAATATAAACTTCTCCCAGA 153523 Query 2610 ATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAAT 2651 || |||||||||||| |||| || || || || || || || Sbjct 153522 ATATCCAGGTGTTCCTTCTGATGTCCAGGAGGAGAAAGGCAT 153481 >seq17760 Length=37209 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | ||||| || ||||||||| | || || || ||||||||| Sbjct 7440 GTGGTGGAGGAGCTCTTCAGGGATGGAGTGAACTGGGGGAGGATCGTGGCCTTCTTTGAG 7381 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || || |||| || |||||| Sbjct 7380 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCCCCCCTGGTGGACAAC 7321 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 7320 ATCGCCCTGTGGATGACTGA 7301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413261641710148