Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq63 156 4e-33 seq1 87.8 2e-12 >seq63 Length=14173813 Score = 156 bits (172), Expect = 4e-33 Identities = 345/514 (67%), Gaps = 4/514 (1%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || || |||||||| || || || || || ||||||| ||| || ||||| ||||| Sbjct 113857 TTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTACATAAAGTCAAATGGATTT 113798 Query 16754 G-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 || ||||||| || | | || || || || | || || || ||||| | Sbjct 113797 TCTACTCTGAAAACCTTGCTAA--AACCTAGCTCCAGCATAAGTCGGTCTGCCACAAACT 113740 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | |||||||| |||||| ||| ||| | || || || || || | || ||| Sbjct 113739 CAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTTCACGGGCAAGGCCTCCA 113680 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGG 16931 | | ||| |||| || || || | |||| || |||| | ||| | Sbjct 113679 TGAGGAATTCCTGCTAGATCTGAATGGCATTGATAATGATTTCCCTCACTCTCTGCTCAG 113620 Query 16932 ACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGT 16991 | ||| |||| || ||||| |||||||| || || || || || ||||| ||||| | Sbjct 113619 AAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCAT 113560 Query 16992 CTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACC 17051 ||||||| |||||||| || |||||||| | || |||||| || || ||||| |||| Sbjct 113559 CTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCACGATTCTTGAACC 113500 Query 17052 AAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTA 17111 | ||||||| || || || ||||||||||| || || || || | ||||| || | | Sbjct 113499 AGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGTGGCAAAGGCCACAA 113440 Query 17112 ATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTT 17171 ||||| | || || || ||||||| | |||||| | |||| || || || | Sbjct 113439 CCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAAAGCCCAATCTGCCTTCT 113380 Query 17172 GCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 ||||| ||| ||| || || ||||| || || Sbjct 113379 TCTTTACACAAGGCATTGTCTCGATGGCATTGAA 113346 >seq1 Length=9663177 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || ||||| || | || |||||| || ||||||| Sbjct 2450221 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 2450280 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 2450281 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 2450340 Query 17106 C 17106 | Sbjct 2450341 C 2450341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517391507266920