Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq63 174 2e-38 seq81 105 7e-18 seq1 93.3 4e-14 >seq63 Length=14173813 Score = 174 bits (192), Expect = 2e-38 Identities = 367/544 (67%), Gaps = 4/544 (1%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || || || || || || |||| || | || || ||||||||||| || || || | Sbjct 113887 ACTCCTATCCTCTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 113828 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| | |||||| ||||| ||||| || ||||||| ||| | || | Sbjct 113827 GAAATATTCTACATAAAGTCAAATGGATTTTCTACTCTGAAAAC--CTTGCTAAAACCTA 113770 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | ||| | | || ||||| ||||| || |||||||| |||||| |||||| Sbjct 113769 GCTCCAGCATAAGTCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCG 113710 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || || || || | || | | | |||| || | ||| || || | Sbjct 113709 TCCCAATGAGCTTCACGGGCAAGGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCAT 113650 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 ||||||| || | ||| ||||| ||| ||||| |||||||| ||||| | Sbjct 113649 TGATAATGATTTCCCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCA 113590 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 | || || ||||| || |||| || || |||||||| |||||||| |||||||| || | Sbjct 113589 GGCAGGCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGA 113530 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 || ||||| || || ||||| ||||||||||||| ||||| || || ||||||| Sbjct 113529 GGCCAGGCATCAGGCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGA 113470 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || |||| ||||| || | | ||||| | || ||||| ||||| | | Sbjct 113469 AGATTCCTTCCACAGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCC 113410 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||| | |||| || || || | |||| |||| ||| || || ||||| | Sbjct 113409 CAATCCAACGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCAT 113350 Query 16440 TAAA 16443 | || Sbjct 113349 TGAA 113346 >seq81 Length=24260673 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| |||||||| || | || ||||| |||| ||||| Sbjct 5360704 CTTCATCTCTGCTGATGAGTTCATTGGAAAATGTGAGTCCAGGCATAAGACCTCTTTTCT 5360763 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||||| Sbjct 5360764 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 5360823 Query 16344 C 16344 | Sbjct 5360824 C 5360824 >seq1 Length=9663177 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| || |||||||| Sbjct 2450223 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 2450282 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || |||| ||||| || Sbjct 2450283 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGC 2450341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511262132755080