Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq100 533 1e-146 seq187 354 6e-93 seq113 313 2e-80 seq104 203 2e-47 seq20739 129 4e-25 seq15927 100 2e-16 seq10 82.4 6e-11 >seq100 Length=27299513 Score = 533 bits (590), Expect = 1e-146 Identities = 465/578 (80%), Gaps = 0/578 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| | |||| |||||| |||||||||||||||||||||||||||||||| | |||| Sbjct 17814153 AAAACATCTTTGCATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTC 17814212 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| |||| |||||| ||| |||||| || |||||||||||| || | | Sbjct 17814213 TCCTCCTGGACATCAGAAGGAACACCTGGGTATTCTGGCAGAAGTTTGTATTTGTCCAAA 17814272 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| ||||||| |||||| || ||||| ||||| |||||||| ||| Sbjct 17814273 TCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATAATCCTTGTCACAAATAGT 17814332 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 |||||| || ||| | |||| ||||| ||||| |||||||| ||||| | |||||| Sbjct 17814333 CTAAGATGGCCTGGTTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAA 17814392 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| |||||||||||||||||||| || || |||||||||| |||||||| | | Sbjct 17814393 ACCATGTCCACTTTATTTGCTAATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCCAGA 17814452 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || | | ||||||||||| |||||| | ||||| || || ||||||||||| | | Sbjct 17814453 CTTTTGCCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGGTCGTTGCTGAGAACTAAA 17814512 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||||||||| | |||||||| || |||||||||||||| |||||||| ||||| ||||| Sbjct 17814513 TTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATAGAGAACCATGTCTTCCTACCC 17814572 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| ||||||||||| || ||| || || || || ||||||||||||||| Sbjct 17814573 ATAATCACCAAATTCTGTTTCCCTTCTACTGAGGAGGTTGTGGTCATTCTTTGGAAAAAC 17814632 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 || || |||||| | || ||||| |||| || || | ||||| ||||||||||| Sbjct 17814633 TTGAATTCATTCCTGAGCGGGGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTC 17814692 Query 4495 TGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || | ||||| | ||||||||||| | ||||||| Sbjct 17814693 TGGGACACAGCGGCTATGCAGTTTAGCGTACGAACCAT 17814730 >seq187 Length=10574154 Score = 354 bits (392), Expect = 6e-93 Identities = 405/544 (74%), Gaps = 14/544 (3%) Strand=Plus/Minus Query 3978 CTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAAC 4037 ||||||||||||| ||||||||||||||| | || ||| || || |||||||||||||| Sbjct 27158 CTTCTCATATACTCTAAATTTGTACTTAATGCCTTCCTCCTCCTGAACATTAGAAAGAAC 27099 Query 4038 ACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTC 4097 || | | |||||| |||||||| | ||||| |||||| ||||| ||||| Sbjct 27098 ACACAGG---------AGAAGTTTTTATTTCTCCAAATCAATTTCTGGGAAAAAAGTGTC 27048 Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 || |||||| || |||| ||||| |||||||| ||| |||| | | ||| | | ||| Sbjct 27047 ACTTTCAAATTCCTGCACAATCCTTGTCACAAATAGTCTAAGGTGGTCTGGCTTATTCAG 26988 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217 ||||| ||||| |||||||| |||| | |||||| |||||||| ||||| ||||| Sbjct 26987 GGCTTCCTTATAAACAGAACTGTCTCCCACTATCCAAACCATGTCCACTTT----GCTAA 26932 Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277 |||||| || || || |||||| |||||| | | ||| || || | |||||||||| Sbjct 26931 TTCTGGTTGCTCAAAAACTTTTAAGGCATCACCCAGACTTTTGGCAAGAAAATGAGCTTC 26872 Query 4278 ATGTGGAAGCTCCTTTAGTTC-CTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCC 4336 |||||| | | ||| || || || ||| | || || ||||| | | |||||||| | Sbjct 26871 TTGTGGAGGTTTCTTGAGGTCTCTAACTGGGCACTCAATCAATTCCGTCCTTTAAAGGTC 26812 Query 4337 GGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTAT 4396 | |||||||| ||||| |||||||| |||| ||||||||||||| |||||||||||| Sbjct 26811 GATTCTTCTCGGGAATAGAGAACCATATCTTCCTACCCATAATCACCAAATTCTGTTTAC 26752 Query 4397 CTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCTTG 4456 || ||| || || | || |||||||||||||||| || || ||||| | | | | Sbjct 26751 CTTCTACCGAGGAGGATGTGGTCATTCTTTGGAAATACTTGAACTCATTTCTGAATGAGG 26692 Query 4457 GCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGCAGT 4516 |||| ||| | || | |||| |||||| |||| || | ||||| | ||||||| Sbjct 26691 GCCACAGCAGTTCCCCGTTCTTGCTGATGCCCCTGTTCTGGGACACAGCGAGGATGCAGT 26632 Query 4517 TTAG 4520 |||| Sbjct 26631 TTAG 26628 >seq113 Length=12518016 Score = 313 bits (346), Expect = 2e-80 Identities = 338/444 (76%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| | ||||||||||||||| |||||||||| | | Sbjct 1084243 AAAACACTTTCACATTAATCATTCTTTTTATATACTTCAAATTTCTACTTAATACCTCTT 1084302 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || ||||| ||| ||||||||||||||||||||||| | ||| || ||| | | | | Sbjct 1084303 TCCTCTTGGACACCAGAAAGAACACTTGGATATTCTAGAAGAAGCTTATATCTTCCCAAA 1084362 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 ||| |||||||||||| |||| || |||||| || ||||||||||| |||||||| ||| Sbjct 1084363 TCAGTTTCTGGAAAAAATGTGTTACTTTCAAATTC-TGCATGATCCTTGTCACAAATAGT 1084421 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 || |||| || ||| | || | ||||| ||||| ||| |||| ||||| | |||||| Sbjct 1084422 TTGAGATGGCTTGGCTTTTTCGTGGCTTCCTTATAAACAAAACTGCCTCCCACTATCCAA 1084481 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 | | |||| ||||| |||| |||||||| ||| | |||||||| ||| |||| | | Sbjct 1084482 ATCTTGTCCACTTTCTTTGTTAATTCTG---GTTTAATCAGTTTTAAGGCACCATCCAGA 1084538 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || | || |||||||||| ||| || | || || ||||| || ||||| | | Sbjct 1084539 CTTTTGGTTAGGAAATGAGCTCCTTGTAGAGGTTCTTTGAGTTC---TCTAAGAACTAAA 1084595 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||||||||| | |||||||| | ||||||| |||| |||| || ||||| || | Sbjct 1084596 TTAATTCTGTCCTTTAAAGGTCACTTCTTCTAGGGAAGAGAGAGTCATGTCTTCCTATGC 1084655 Query 4375 ATAATCACTAAATTCTGTTTATCT 4398 |||||||| ||| ||| |||| || Sbjct 1084656 ATAATCAC-AAAATCTATTTACCT 1084678 >seq104 Length=16813181 Score = 203 bits (224), Expect = 2e-47 Identities = 190/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| ||| Sbjct 6325655 AGCTCTTAAGCCACATGGCGCACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 6325714 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | |||||| | ||| | | | |||| || || ||| Sbjct 6325715 ATCTTCTCCAGCCGGAAGGAGTGGGGGCAGTGCTGAGACTCCCTTCGCAGAACCAGGATC 6325774 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| |||||||||||||||| |||| |||| |||||| | ||||| Sbjct 6325775 TCTTGCTGGATGGGGACGGAGTTCATGTGGTAGTTTACAGTCCCTTCAGCACTGACACAG 6325834 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| |||||||| ||||| ||||||||||||||||| || | || |||||| Sbjct 6325835 CCCAAGTGGCGGCACTTTGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTG 6325894 Query 27171 CG 27172 || Sbjct 6325895 CG 6325896 >seq20739 Length=3334071 Score = 129 bits (142), Expect = 4e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||||||||||||||||| Sbjct 1930781 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 1930840 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||||||||| |||||||| | ||| || | | ||||||||||| |||||| Sbjct 1930841 TGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGCCAAGAAAATGAGCTCCTTGTGGA 1930900 Query 4285 AGCTCC 4290 | ||| Sbjct 1930901 GGTTCC 1930906 Score = 122 bits (134), Expect = 6e-23 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 1936041 CTTGAGGTCTCTGCTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 1936100 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 ||| |||||||| ||||| ||||||||||||| ||||||||||| Sbjct 1936101 AATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTT 1936145 Score = 113 bits (124), Expect = 3e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104 || ||| || |||||||||||| || | ||||| |||||||||||| ||||||| |||| Sbjct 1929425 TACTCTGGCAGAAGTTTGTATTTGTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCA 1929484 Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164 || || ||||| ||||| |||||||| ||| |||||| || ||| | |||| ||||| Sbjct 1929485 AATTCCTGCATAATCCTTGTCACAAATAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCC 1929544 Query 4165 TT 4166 || Sbjct 1929545 TT 1929546 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| | |||| |||||| |||||||||||||||||||||||||||||||| | |||| Sbjct 1922672 AAAACATCTTTGCATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTC 1922731 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| |||| |||||| ||| ||| Sbjct 1922732 TCCTCCTGGACATCAGAAGGAACACCTGGGTAT 1922764 >seq15927 Length=1038 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| | |||| |||||| |||||||||||||||||||||||||||||||| | |||| Sbjct 93 AAAACATCTTTGCATTAATCGTTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTC 34 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| |||| |||||| ||| ||| Sbjct 33 TCCTCCTGGACATCAGAAGGAACACCTGGGTAT 1 >seq10 Length=40277251 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| |||| Sbjct 9531080 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 9531139 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| | || || || | || || || || ||| || || || ||||| | Sbjct 9531140 CTTCTCTGTTGCAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCGTCCCAGA 9531199 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 9531200 TTTTCACTCC 9531209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361146330921569