Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq199 293 3e-74 seq10 187 3e-42 seq36 168 8e-37 seq125 116 4e-21 >seq199 Length=18468921 Score = 293 bits (324), Expect = 3e-74 Identities = 551/801 (69%), Gaps = 23/801 (3%) Strand=Plus/Minus Query 176451 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 176510 || ||||| || ||| | |||||||| || || |||||||| ||||| || || || Sbjct 9208703 ACCAACATCTTCCTGCTCAACTTGGCTATTTCGGACTTGCTCTTTCTATTCACCCTGGTG 9208644 Query 176511 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 176570 || ||||| || || ||| || | |||| ||| |||||| || | ||||||| Sbjct 9208643 TTCTGGATTCATTACGCTGGG-TGGA--ATGAGTGGGTTTTTGGCGCTTTCATGTGTAAG 9208587 Query 176571 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 176630 || ||| || | | |||| || | |||||| || |||||| |||||||||||| Sbjct 9208586 CTCCTCTCTGGGCTTTATTACGTGGGCTTATACAGCGAGATCTTTTTCATCATCCTGCTG 9208527 Query 176631 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAG 176688 || ||||||||||| || || | ||| | || || ||| || ||| | || | Sbjct 9208526 ACCGTAGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGACTG 9208469 Query 176689 TAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 176748 | || | ||| | | || |||| |||||| ||||||||| | |||||| Sbjct 9208468 TCACTTTTGGTGTCATCACGAGTGTCCTCACCTGGGGCCTGGCAGGGCTAGCAGCCCTCC 9208409 Query 176749 CTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGAT--CCTTA 176806 |||| ||| |||| ||| |||||| || | | || || || | ||| Sbjct 9208408 CTGAGTTTATCTTCCATAAGTCCCAAGACGAGG--GCCAACATTTTGTCTGCTTGCCTCT 9208351 Query 176807 CTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTA 176862 |||||| | | | ||||||| || ||| ||| | | | ||| || Sbjct 9208350 TTACCCAAAAGACCAAGAAGACAAATG----GAAGCGTTTCCATGCTCTGAGAATGAATA 9208295 Query 176863 TGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAA 176922 | | |||| | |||||||||| || |||| ||||||||||| || |||||| | || Sbjct 9208294 TCCTGGGTCTTGCTCTGCCTCTGCTTATCATGGGTGTCTGCTACTCTGGAATTATTAAAA 9208235 Query 176923 GACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCA 176982 ||| |||| ||||||| ||||| ||||||||||||||| ||||||| |||||||||| Sbjct 9208234 CGCTGCTGAGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCA 9208175 Query 176983 TGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTC 177042 |||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | |||| Sbjct 9208174 TGGTGGTCTTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTTCTCTCTGCTTTTC 9208115 Query 177043 ACGCAACCCTTCTTAA--CCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCT 177100 | | | | | || | || | ||| ||| ||||| | ||||| |||| ||| Sbjct 9208114 AAACGATCTTCTTTGAGGCCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATGCA 9208057 Query 177101 GATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGT 177160 | | || | | |||||||| ||||| ||| ||||||| | |||||||| ||||| Sbjct 9208056 GGTGACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCATCATCTACGCCTTCGT 9207997 Query 177161 GGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCT 177220 ||||||| ||| | | || || | |||||| |||| || ||||||||| |||||| Sbjct 9207996 CGGGGAGAGGTTCCGGAATCATCTCTGCCACTTTTTCCGCAGGCACGTGGCCACCTACCT 9207937 Query 177221 CTGCAAGTACATCCCCTTCCT 177241 |||| |||||||||||||| Sbjct 9207936 GGGCAAATACATCCCCTTCCT 9207916 Score = 293 bits (324), Expect = 3e-74 Identities = 551/801 (69%), Gaps = 23/801 (3%) Strand=Plus/Minus Query 9565 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 9624 || ||||| || ||| | |||||||| || || |||||||| ||||| || || || Sbjct 9208703 ACCAACATCTTCCTGCTCAACTTGGCTATTTCGGACTTGCTCTTTCTATTCACCCTGGTG 9208644 Query 9625 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 9684 || ||||| || || ||| || | |||| ||| |||||| || | ||||||| Sbjct 9208643 TTCTGGATTCATTACGCTGGG-TGGA--ATGAGTGGGTTTTTGGCGCTTTCATGTGTAAG 9208587 Query 9685 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 9744 || ||| || | | |||| || | |||||| || |||||| |||||||||||| Sbjct 9208586 CTCCTCTCTGGGCTTTATTACGTGGGCTTATACAGCGAGATCTTTTTCATCATCCTGCTG 9208527 Query 9745 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAG 9802 || ||||||||||| || || | ||| | || || ||| || ||| | || | Sbjct 9208526 ACCGTAGACAGGTACCTGGCCATCGTCCACGCCGTGTTTGCCCTTCGAGCCC--GGACTG 9208469 Query 9803 TAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 9862 | || | ||| | | || |||| |||||| ||||||||| | |||||| Sbjct 9208468 TCACTTTTGGTGTCATCACGAGTGTCCTCACCTGGGGCCTGGCAGGGCTAGCAGCCCTCC 9208409 Query 9863 CTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGAT--CCTTA 9920 |||| ||| |||| ||| |||||| || | | || || || | ||| Sbjct 9208408 CTGAGTTTATCTTCCATAAGTCCCAAGACGAGG--GCCAACATTTTGTCTGCTTGCCTCT 9208351 Query 9921 CTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTA 9976 |||||| | | | ||||||| || ||| ||| | | | ||| || Sbjct 9208350 TTACCCAAAAGACCAAGAAGACAAATG----GAAGCGTTTCCATGCTCTGAGAATGAATA 9208295 Query 9977 TGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAA 10036 | | |||| | |||||||||| || |||| ||||||||||| || |||||| | || Sbjct 9208294 TCCTGGGTCTTGCTCTGCCTCTGCTTATCATGGGTGTCTGCTACTCTGGAATTATTAAAA 9208235 Query 10037 GACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCA 10096 ||| |||| ||||||| ||||| ||||||||||||||| ||||||| |||||||||| Sbjct 9208234 CGCTGCTGAGATGCCCCAGTAAGAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCA 9208175 Query 10097 TGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTC 10156 |||||| || ||| |||| ||||||||||||||| | || ||||| || ||| | |||| Sbjct 9208174 TGGTGGTCTTTTTCATTTTCTGGACACCCTACAACCTGGTCCTCCTTCTCTCTGCTTTTC 9208115 Query 10157 ACGCAACCCTTCTTAA--CCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCT 10214 | | | | | || | || | ||| ||| ||||| | ||||| |||| ||| Sbjct 9208114 AAACGATCTTCTTTGAGGCCAGTTGTGAGCA--GAGCAAACAGCTGGACGTGGCCATGCA 9208057 Query 10215 GATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGT 10274 | | || | | |||||||| ||||| ||| ||||||| | |||||||| ||||| Sbjct 9208056 GGTGACGGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCCATCATCTACGCCTTCGT 9207997 Query 10275 GGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCT 10334 ||||||| ||| | | || || | |||||| |||| || ||||||||| |||||| Sbjct 9207996 CGGGGAGAGGTTCCGGAATCATCTCTGCCACTTTTTCCGCAGGCACGTGGCCACCTACCT 9207937 Query 10335 CTGCAAGTACATCCCCTTCCT 10355 |||| |||||||||||||| Sbjct 9207936 GGGCAAATACATCCCCTTCCT 9207916 >seq10 Length=40277251 Score = 187 bits (206), Expect = 3e-42 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 9528512 AGGCCGGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 9528571 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||||||||| |||||||||||||||||||| ||||| ||| | || Sbjct 9528572 ACGCCCAGGCCCATGTCCCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTTCCCC 9528631 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||||| || || |||||||| Sbjct 9528632 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCAT 9528672 >seq36 Length=6971902 Score = 168 bits (186), Expect = 8e-37 Identities = 132/157 (84%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||||||| || ||||| || ||||||||||||||||||||||| | ||| Sbjct 586147 CAGCGCCGCAGCCTCAGCCGCAGGGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGCTCC 586088 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | ||||||||| |||||||||||||||||||||| |||||||||| Sbjct 586087 TTGAT---GTCTGGGTCGTGGTTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAACTGG 586031 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 586030 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 585994 Score = 111 bits (122), Expect = 2e-19 Identities = 137/182 (75%), Gaps = 9/182 (5%) Strand=Plus/Minus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| ||||||| |||||| || | |||||| | ||||||||||||||||| Sbjct 584856 AAAGAAAGTCTTCACCCTGCCGAAGGCAGCTCGGAGCTCTCGCAGCATGTGGGGCAGGCT 584797 Query 138357 GG-TGGGCAATGTAGGGCAGTCGTCCCCAGAC---TCACTGTCATATTTGTTGTCGGCCC 138412 || |||| | || | ||||| |||| ||||| || ||| | | | | ||| | Sbjct 584796 GGCTGGGAAGTG-GGTGCAGTTGTCCTCAGACGGGGCAGTGTGGTGTCGGCT---GGCTC 584741 Query 138413 ACACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGCTAA-TCTG 138471 ||||||||||| || ||||||||||||||| ||| || ||| ||||| || |||| Sbjct 584740 CTACCCCGGCCAGCAGGACCAGGCAACACAGCTGCGCTGGGCTGGGCATGGTGAAGTCTG 584681 Query 138472 CC 138473 || Sbjct 584680 CC 584679 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||| |||||||| | | |||||||||| ||||||||||| |||||||||||||| || Sbjct 588401 TCAGATTTTCATCCTCATTGTCATGTAGGTTTCTATGTAGTTGATGAAGATGTCAAATTC 588342 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||| | || ||||||| Sbjct 588341 ACTCATGGCTTTGTAGACACCTCTCTCTTGGAGCT 588307 Score = 95.1 bits (104), Expect = 1e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074 ||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 587240 CTTACTAAAGGCGCTCTTCACCTGCTCCACCGCCTTGCTCTTATTCTCGCAGGGCAGAAA 587181 Query 138075 TC 138076 || Sbjct 587180 TC 587179 >seq125 Length=3337254 Score = 116 bits (128), Expect = 4e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 145688 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCT 145747 |||| ||||| || ||||| | || || || |||| || | ||||| | |||| Sbjct 3252551 GCTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACGAAGTTAGCTGGCT 3252610 Query 145748 CGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA---GCTGGCTATGTTGA 145804 ||||||| || ||| |||||||||||||| ||||||| || |||||| ||| | Sbjct 3252611 TCAGGCCCGCGATGTGTGCGACCATGTAGGTGAGCAGGGCCTACGAGCTGGCGATG---A 3252667 Query 145805 AGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGC 145864 | ||||| ||||| |||||||| | ||| | ||| ||| | |||| || |||| || Sbjct 3252668 AAGGCACACCCAGGCCCATGTCTCACGACCTGTGGCACAACGGGCAAGACAGCTTGCCAT 3252727 Query 145865 CCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCC 145908 ||||||||||| ||| ||| |||||||| | ||||||| Sbjct 3252728 TTACCACGTAGAACCCGCAAAGGGCATGGCAGGGAGCCAGGGCC 3252771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589901112008760