Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq199 262 5e-65 seq23365 205 1e-47 seq198 125 9e-24 seq55 123 3e-23 seq109 84.2 3e-11 >seq199 Length=18468921 Score = 262 bits (290), Expect = 5e-65 Identities = 261/338 (77%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | ||| | ||||| |||||||||||||| Sbjct 6806153 AGCAGGGCTTCGATGTCAGGCTCGATATCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 6806094 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||| || | ||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 6806093 ACAGGCACGCCATCCGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCGACGTCGTTGCGG 6806034 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| || |||||| ||| || || | |||||| || Sbjct 6806033 CACACGGGAGACCAGATGATGAACTTTGGGTCGGTCATGAACGCAGTGGCGTCGTCACTG 6805974 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||| ||||| || |||||||||||||| || || ||| || ||||| ||| Sbjct 6805973 GGGACAGGCAGAGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCTGCGCGCCGTTCACC 6805914 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| || ||| ||||||| |||||||| ||| || || ||||||| ||| Sbjct 6805913 TCGCACTTCTCAAAAAGCGTAAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACGTACTTG 6805854 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || |||||| | |||| |||| ||||| Sbjct 6805853 AGGGAATTCAGGATCTCTTCGTTCTTACCGTTCTCCTG 6805816 >seq23365 Length=2877893 Score = 205 bits (226), Expect = 1e-47 Identities = 282/385 (73%), Gaps = 7/385 (2%) Strand=Plus/Minus Query 83136 CCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAA 83195 ||||| ||||||||| || |||||||| |||| |||||||||||| |||||||||| | Sbjct 774706 CCACCTGGAACTTCTCTAAATTCCAGGCGACGTTGTTGCGGCACACGGGAGACCAGGTGA 774647 Query 83196 TGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTC 83255 ||| | | ||||| || || || | ||| | || || |||| ||| | | Sbjct 774646 TGAACCTGAGGTCGGTCCTGACCGCAGAGGCGGTGTCACCGGGAGCAGGCAAAGCCCC-C 774588 Query 83256 GTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCA 83315 | || ||||||||||| || || ||| || ||||| ||||||||||| || || ||| Sbjct 774587 GCAGAAAGGCGAAGAGGGG-TGCGCCTGCGCGCCGTTCACCTCGCACTTGTCAAAAAGCG 774529 Query 83316 TAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTC-G 83374 | ||| | |||||||| | | | || || ||||||| ||| |||| | || |||||| Sbjct 774528 TCAAGGTGGGCTCGAACCAGCTGCCGGGTCGGACGTACTTGAGGGGATTCAGGATCTCTT 774469 Query 83375 GCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGC-ACTACCAG 83433 | |||| || ||| ||||| || ||||||||| | |||||| || ||| || ||||| Sbjct 774468 GGTTTCT-GGTGTTCTCCTGATGCAGGAACTGGTTGCTCGGGAAGCCGAGCAACGACCAG 774410 Query 83434 -CCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGC 83492 ||| |||| || |||| | || |||||||||||||||| | | | |||| |||| | Sbjct 774409 TCCCTAGAGC-CCGAGGCCCTGCCGCAGCTCGTTCATCTGGGCGGAGTCCCAGACCTTTG 774351 Query 83493 TACCTCAGAGGGACGCTACGTTCTC 83517 |||||||| || || || ||||| Sbjct 774350 GGCCTCAGAGCGAGGCCACATTCTC 774326 >seq198 Length=19200852 Score = 125 bits (138), Expect = 9e-24 Identities = 284/421 (67%), Gaps = 22/421 (5%) Strand=Plus/Minus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 ||| || |||||||| | ||| | ||||| ||| |||||| ||| ||| || Sbjct 234047 GATATCAGGCTCCACATAAATGGTTGGAAAGCGGCAGCTCTACCTGTTCACAGGCACACC 233988 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACA--CTGGA 83185 | | ||||||| ||||||||| ||||||||||| |||| |||| || ||| ||| Sbjct 233987 ATGTGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACGTTGTTGAGGAACATCCTG-- 233930 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGC 83245 ||||| | |||| || ||||| | || |||| | ||| || || || || | | Sbjct 233929 GACCAAGTGATGAACTTGGGGTTGGTCGTGAGCACAGTGGTGTTTTCACTGGGGGCAGAC 233870 Query 83246 AGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTC 83305 || ||||| || |||| |||| | || || || ||||| ||| ||||| |||||| Sbjct 233869 AGAGCCTCCTACAGCAAGGTGAAG-GGGGGTGCACCTGTGCACTGTTCACCTCACACTTC 233811 Query 83306 TCGAAGAGCATAAAGTTCGGCTCGAA----------GCCGTTCCCAGGACGGACGTGCTT 83355 || || |||| ||| | |||| || | | | || ||| |||||| Sbjct 233810 TCAGAG-GCATGAAGGTTAGCTCCAACTACAACTTGGGTGGT----GGTGGGATGTGCTT 233756 Query 83356 CAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGG 83415 | |||| || |||||| |||| ||| || ||||| || | ||||||||| | || Sbjct 233755 GAAGGAATTCAGGATCTCTTTCTTCTTGGCATTCTCCTGATGCCAGAACTGGTTGCCTGG 233696 Query 83416 GAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGT 83475 ||| | || ||||| ||| | | || ||| ||| ||||||||| ||||||| ||| Sbjct 233695 GAAGCTGAGTTTGACCAGGCCCTG-GGACCAAGGTGCCACTGCAGCTCCTTCATCT-AGT 233638 Query 83476 G 83476 | Sbjct 233637 G 233637 >seq55 Length=12483386 Score = 123 bits (136), Expect = 3e-23 Identities = 183/257 (71%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| | ||||| ||||| ||| ||| | || ||||||||||||||| | Sbjct 11662323 AGCAGGGTTTTAATGTCAGGCTCATTGGCAGTGGTTGGAAAGTGGTGGCTGTACCTGCAC 11662382 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||| || |||| ||||||| |||||||| |||||| |||| | || ||||| Sbjct 11662383 GTGGGCAAACCATCAGGGCCCACCAGGAACTTCTTGAAGTTTCAGGAGATGTTGTTGCAC 11662442 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||||||| |||||| || | || ||||| | ||| ||| | | || | || Sbjct 11662443 CACACTGGAAACCAGGTGATAAACTTGGGGTTGGTCAGGAGAGCAGTGGCATCATGACTG 11662502 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTG--CACCGTTGA 83294 || || ||||| ||||| ||||||||| ||| | || |||| | || |||| || | Sbjct 11662503 GGGGCAGGCAGAGCCTCCTATAGGAAGGC-AAGGGGGGGGGTGCGCCTGCACACCATTCA 11662561 Query 83295 CCTCGCACTTCTCGAAG 83311 ||| ||||||||| ||| Sbjct 11662562 CCTTGCACTTCTCAAAG 11662578 >seq109 Length=46051422 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 83387 TTTTCCTGGTGACC-GAACTGGTTACAC-GGGAACCCAAGCACTACCAGCCCCCGAGCTC 83444 || ||| | || || ||||| ||| ||| ||||| |||||||||||||| || ||| Sbjct 30385708 TTCTCCAGATGCCCTGAACTTGTTGCACAGGGAAGCCAAGCACTACCAGGCCTTGAGGCT 30385767 Query 83445 CTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGG 83504 ||| || |||| ||||| || ||||| ||||| |||| |||| | ||||| || Sbjct 30385768 AGAGGTGCAGCTGAAGCTCATTTATCTGTGTGTAGTCCCAGACCACTGTGCCTCAAAGCA 30385827 Query 83505 ACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTC 83564 | | || ||||| | ||||| ||| |||| | || | || | |||| |||| |||| Sbjct 30385828 AGGGGACATTCTCAAAGAGCAGCACCTTGCCCTGCAAAGAACCCAGGCTCTCAGGCTCTC 30385887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608615538362760