Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq48 123 2e-23 seq77 111 1e-19 seq49 87.8 2e-12 seq35 87.8 2e-12 seq51 82.4 7e-11 >seq48 Length=2952444 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| |||||||||||||| | |||||| ||| || ||||| || ||| Sbjct 2403988 GTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTACCA 2403929 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| | |||||| || || || |||||||| || ||| || || || Sbjct 2403928 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 2403869 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| |||||| || ||| ||||| | ||| | || ||||||||||| || Sbjct 2403868 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2403809 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 2403808 TTCACGAAGATCTGCATG 2403791 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | |||||| ||| || Sbjct 2403772 ACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2403713 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| | |||||| || || || |||||||| || ||| Sbjct 2403712 AGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 2403653 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| ||| || || ||| ||||| | ||| | || ||| Sbjct 2403652 ATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2403593 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || ||||| ||||||||| Sbjct 2403592 CCGGTCAGGGTCTTCACAAAGATCTGCATG 2403563 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || |||||||| || ||||||||||| | |||||| ||| || Sbjct 2403544 ACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2403485 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || |||||||| || ||| Sbjct 2403484 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 2403425 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| ||| || || ||| ||||| | ||| | || ||| Sbjct 2403424 ATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2403365 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 2403364 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2403336 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || |||||||| || ||||||||||| | ||| || ||| || Sbjct 2404228 ACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCC 2404169 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| | || || | |||||| || || || |||||||| || ||| Sbjct 2404168 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 2404109 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 2404108 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2404049 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || || ||||||||| Sbjct 2404048 CCGGTCAGGGTCTTCACGAAGATCTGCATG 2404019 >seq77 Length=12846609 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || |||||| ||| || Sbjct 3756468 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3756409 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| | | |||||| ||||| || |||||||||||||| Sbjct 3756408 AGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 3756349 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | |||||| || ||| ||||| | ||| | ||||| Sbjct 3756348 ATCTTCGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTA 3756289 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || || |||||||| Sbjct 3756288 CCGGTCAAGGTCTTCACGAAGATCTGCAT 3756260 >seq49 Length=13345899 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118531 CCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||||| | || | |||||| ||||| | ||| || | | |||| ||||| | Sbjct 7318901 CCAAGTACAGGGTGGCCTCTTTCTGAATATGGTAGTCTGAGAGAATGCGGCCCTCCTCCA 7318960 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT-A 118649 ||||||| || || | |||||| ||||| | ||||| || ||||||||||||| ||| Sbjct 7318961 GCTGTTTACCCGCAAAAATGAGATGCTGCGGGTCGGGCGGGATGCCCTCCTTGT-TGTGG 7319019 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||||| | || || ||| || ||||||||||| | || || ||| Sbjct 7319020 ATTTTGGCTTTAATTTTCTCAGTGGCGTCACTGGACTCGACCTCGAGAATGACGGTCTTG 7319079 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||| | |||||||| Sbjct 7319080 CC-ATCAGGGTCTTCACAGAGATCTGCAT 7319107 >seq35 Length=23054638 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| |||||||| || | |||| |||||||||||||| || || |||||||||| Sbjct 6921957 ATCCTCCAGCTGTTTGCCCACTAAGATCAGACGCTGCTGATCAGGGGGC-TGCCCTCCTT 6921899 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| |||| ||| || | || |||||| || | ||||| ||| ||||| Sbjct 6921898 GTCTTGGGTTTTGGCTTTGACATTCTCTGTGGTGTCACTGGACGCGACCCCGAGGGTCAT 6921839 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 118735 || |||| || ||| || || ||||| ||||| Sbjct 6921838 GGTCTTGCTGGCCAGGGTCTTCACAAAGATCTG 6921806 >seq51 Length=29663373 Score = 82.4 bits (90), Expect = 7e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 118574 AGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 |||||| | || ||| ||||||| || || | || ||||||||||| || || || || Sbjct 12117896 AGTGCGGGCATTCTCCAGCTGTTCGCCTGCAGAAATCAGACGCTGCTGGTCAGGCGGGAT 12117837 Query 118634 GCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693 ||||||||||||| | ||| ||| || | || |||||| ||| ||| ||||| Sbjct 12117836 GCCCTCCTTGTCTTGGACTTTGGCTTTGACATTCTCAGTGGTGTCAGTGGGCTCCACCTC 12117777 Query 118694 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 | || | ||| |||| ||| | || || |||| |||||| Sbjct 12117776 GCGGGCTATGGTTGTGCCCGTCGGGGTCTTCACAAGGATCTGC 12117734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433704461610748