Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq34 95.1 2e-14 >seq34 Length=18642241 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248 ||||||||| | | || ||||| || || |||| |||||| |||||||| || ||| Sbjct 13880105 CAGTTCCATGTGACCATTGGACACACAGCACTGTCTCTTTACACGGATTGCCCCTTCCCA 13880046 Query 52249 AAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAAC 52308 |||||||| || ||| | | ||| ||| | || || |||||||| || ||| |||| Sbjct 13880045 AAATGGATGCACTGGGCCCTCATTGCCTACGCGATCAGCTTCATATTTCTCTTTCTTAAC 13879986 Query 52309 TTCTATTTTAGAACATACAA 52328 |||||| || | |||||||| Sbjct 13879985 TTCTATGTTCGGACATACAA 13879966 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| || || || |||||||| ||||||||| | || ||||| Sbjct 13882655 GCATTTTTTGGAGCACAGCTGAACTCCTTCATCCATGTGATTATGTACTCATACTATGGG 13882596 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| | ||||| |||||| ||||||||||| || | |||| Sbjct 13882595 TTAACTGCATTTGGCCC-ATGGATCCAGAA-GTATCTTTGGTGGAAACGATACTTGACTA 13882538 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 13882537 TGTTGCAGCTGGT 13882525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922921929692760