Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq63 149 6e-31 seq81 107 2e-18 seq1 86.0 6e-12 >seq63 Length=14173813 Score = 149 bits (164), Expect = 6e-31 Identities = 381/573 (66%), Gaps = 18/573 (3%) Strand=Plus/Minus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| ||| || | ||||| |||| ||||| || ||||| Sbjct 113909 ATTCTCTGTTGGACTTGACATCACTCCTATCCTCTGATACTCACCTACTCTATTCTCAAA 113850 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032 ||| || || || ||||| | ||||||||| | |||||| ||||| ||||||| | || Sbjct 113849 GAAGTTAGTCTTCCCTTCCAGTGAAATATTCTACATAAAGTCAAATGGATTTTCT--ACT 113792 Query 16033 ATAGTATTTATCGC---ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATA 16089 | | | | || | || | |||| || | || || |||||||| || ||||| Sbjct 113791 CT-GAAAACCTTGCTAAAACCTAGCTCCAGCATAAGTCGGTCTGCCACAAACTCAATATA 113733 Query 16090 CTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 || |||||||| || ||| | || || | || || || | || || | | || Sbjct 113732 TTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTTCACGGGCAAGGCCTCCATGAGGAA 113673 Query 16150 AtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGG 16209 | | | || | || || | || || || || || ||| | || | | || | Sbjct 113672 TTCCTGCTAGATCTGAATGGCATTGATAATGATTTCCCTCACT-CTCTGCTCA---GAAG 113617 Query 16210 GTTTAATAA----GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCC 16265 ||||| | |||||| ||||| | || ||||| ||||| || || || || || | Sbjct 113616 GTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCATCTC 113557 Query 16266 TACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAA 16325 | || || | || || |||||||| || || ||||| || || || || || | ||| | Sbjct 113556 TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCACGATTCTTGAACCAGA 113497 Query 16326 ATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATC 16385 |||| | ||||| |||||||||||||| || ||||| || | |||||| || || | | Sbjct 113496 ATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGTGGCAAAGGCCACAACCC 113437 Query 16386 GCTCACCGTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttg 16443 | || || || || || ||| | | | ||||| |||||||| ||| || | Sbjct 113436 GTTCTCCATAGGTAGCCTCTTTGTCC--CCAATCCAACGCAAAGCCCAATCTGCCTTCTT 113379 Query 16444 tttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 || ||||| ||| |||| || ||||| || Sbjct 113378 CTTTACACAAGGCATTGTCTCGATGGCATTGAA 113346 >seq81 Length=24260673 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | || ||| |||| | Sbjct 5341865 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 5341924 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 5341925 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTT 5341984 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 5341985 CCATAAAATCAAAGGGATTTTCTG 5342008 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| | ||||| | |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 5348612 ATCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 5348671 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||||| || | ||| || | |||||||||||||| Sbjct 5348672 AATTCATTCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 5348714 >seq1 Length=9663177 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || ||||| || || || ||||| || || ||||| || Sbjct 2450223 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 2450282 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| || |||||||| || Sbjct 2450283 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 2450342 Query 16379 AC 16380 || Sbjct 2450343 AC 2450344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462374292833400