Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq241 1674 0.0 seq101 159 2e-34 >seq241 Length=15830963 Score = 1674 bits (1856), Expect = 0.0 Identities = 1361/1651 (82%), Gaps = 40/1651 (2%) Strand=Plus/Plus Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCA 107195 ||| || | |||||| | ||||||||||| || |||| ||||||| | | ||| ||| Sbjct 12539256 AGGCTCCTCGGCAGGTCGTGACTGAGGATGTTAATCTAGAGAAGACCCGTCTTTTTGCCA 12539315 Query 107196 TCACTCTGGAGTTGAACTTGATGTTCT--------------GGATTAGTTTGTAATTAAA 107241 | || |||||| || |||||||||| || ||||||||||||| || Sbjct 12539316 CCCCTTTGGAGTCGAGCTTGATGTTCCTGTGAATACATTCAGGGTTAGTTTGTAATTGAA 12539375 Query 107242 GGCATTTTGTTCTGTCCAAGGATC--TCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCT 107299 |||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||| Sbjct 12539376 GGCATTTTGTTCTGTCCAAGGATCCATCCTCCTCCTCCTTCCCTGTGCCCCAACTCTCCT 12539435 Query 107300 GATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCT 107359 | | || ||| || |||||||| | ||||||||||| |||| |||| | | ||| || Sbjct 12539436 GGTTTCTCATTCCGTGAAGATGATTTGGTGGAAGAAGCAGCTGTGCCAGCAGCGTCACCT 12539495 Query 107360 GTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTT 107419 |||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||| | Sbjct 12539496 GTGGGCCCTGGGCTGCTACATGCTGCTGGCCGTTGTCGCTCTGAGGTTTTCTCTCAGACT 12539555 Query 107420 TAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAG 107479 |||||||| | |||||| |||||||||||||||| ||||||| || ||||||||||| Sbjct 12539556 GAAATGTGACTTTGATTCCCTGGATCTGGAGTCCAGCGACTTCCGAAGCCAGCACTGTAG 12539615 Query 107480 GGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGAT 107539 |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| || Sbjct 12539616 GGACATCTTGTACAACTCCCTGAAGCTGCCAGCAAAGAGGTCCATCAACTGTTCTGGAAT 12539675 Query 107540 CACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAA 107599 || ||||||||||| |||||||| |||| ||||| ||||||||||| || ||||| Sbjct 12539676 CATCCGAGGGGACCACCAAGCAGTGACGGAGGCTCTCCTGGACAACCTGGAGGTCAAGAA 12539735 Query 107600 AAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTT 107659 |||||| |||| |||| | |||| | ||||| ||||| ||| |||||||||||| ||| Sbjct 12539736 GAAGCGGGAGCCTTTCACAGACACCGACTACCTTAACATGACCCGAGACTGTGAGCACTT 12539795 Query 107660 CAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCAT 107719 ||||||| ||||||||||||||| |||||| ||||| ||||||||| |||||||||| || Sbjct 12539796 CAAGGCCGAAAGGAAGTTCATACGGTTCCCTCTGAGCAAAGAAGAGTTAGACTTCCCTAT 12539855 Query 107720 TGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGT 107779 || ||||| ||||||||||| |||||||| || | ||| ||| | ||||||||||| Sbjct 12539856 CGCGTACTCTATGGTGGTCCACGAGAAGATAGAGAGCTTCGAAAGACTGCTGCGAGCTTC 12539915 Query 107780 GTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAA 107839 |||||||||||||||||| ||||||||||| ||||||| ||| |||||||| |||||||| Sbjct 12539916 GTATGCCCCTCAGAACATCTACTGTGTCCATGTGGATGAGAAATCCCCAGAAACTTTCAA 12539975 Query 107840 AGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGT 107899 ||||||||||||||| ||| | || |||||||| ||||||||||| ||||||||| |||| Sbjct 12539976 AGAGGCGGTCAAGGCGATTGTGTCGTGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGT 12540035 Query 107900 CCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTT 107959 | |||||||| |||||||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct 12540036 TCGCGTGGTTTACGCCTCCTGGTCCAGGGTGCAGGCTGACCTCAACTGTATGGAGGACTT 12540095 Query 107960 GCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCAT 108019 |||||||||| ||||||||||||| |||||||||||||| || ||||||||||| ||||| Sbjct 12540096 GCTCCAGAGCCCAGTGCCATGGAAATACTTACTGAATACGTGTGGGACAGACTTTCCCAT 12540155 Query 108020 AAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGA 108079 ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 12540156 AAAGACCAACGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGGA 12540215 Query 108080 GTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGA 108139 |||||| |||| | |||| |||||| |||||||| |||| ||||||||||||||| Sbjct 12540216 GTCTGAAAAACCTACCGAGTACAAAAAGTCTCGCTGGACGTACCACTATGAGGTGACAGA 12540275 Query 108140 CACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCAC 108199 |||| ||||| ||||||||||||||||| ||||| || |||||| | || |||||||| Sbjct 12540276 CACATTGTACATAACCAGCAAGATGAAGGATCCTCCGCCGGATAATATGCCTATGTTCAC 12540335 Query 108200 AGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA 108259 || ||||||||| ||||||| |||||| ||||||||| ||||||||||| ||||| || Sbjct 12540336 GGGCAATGCCTATATTGTGGCTTCTCGAAACTTTGTCCAGCATGTCTTAGAGAACCCCAA 12540395 Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319 |||| ||||||| | || ||||| |||||||||||||||||||| || || |||||||| Sbjct 12540396 GTCCCGAAGACTGATCGAGTGGGTAAAAGACACCTATAGCCCCGATGAGCATCTCTGGGC 12540455 Query 108320 CACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACAT 108379 ||||||||||||||| ||||||||||| || ||| |||| ||||||||||| |||||| Sbjct 12540456 CACCCTTCAGCGTGCGCCGTGGATGCCGGGTTCTATTCCCTACCACCCCAAGTTTCACAT 12540515 Query 108380 CTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAG 108439 ||| |||||||| ||||| |||||||| ||||||||||| ||| |||||||| ||| Sbjct 12540516 CTCCGACATGACAGCCATTGCCAGGCTGGTCAAGTGGCAAGGCCATGAGGGAGACATCAC 12540575 Query 108440 CATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGG 108499 |||||||| ||||||||||| ||||| |||| ||| | | || | | || |||| || Sbjct 12540576 TATGGGGGCACCTTATGCACCTTGCTCCGGAACCCACCAGCGGTCTGTGTGTGTTTATGG 12540635 Query 108500 GGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 | | ||||||||| | |||||||| || ||||||||||| ||||| |||||||||||||| Sbjct 12540636 GACTGGGGACCTGCATTGGATTCTTCAAAACCATCACCTGTTGGCTAACAAGTTTGACCC 12540695 Query 108560 GAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTA 108619 | ||| ||||| || || || |||||||||||||||||| |||| ||||||||||||| Sbjct 12540696 AAAGGTAGATGACAATGTTCTTCAGTGCTTAGAAGAGTACTTACGCTATAAGGCCATCTA 12540755 Query 108620 TGGGACTGAACTTTGAGCTGC------------------ACTGTGGGCCAGGGAC-TGTG 108660 |||||||||||| |||| | | ||||||| |||| || |||| Sbjct 12540756 TGGGACTGAACTCTGAGATACCCTATCAGAGAATTGCTACCTGTGGGGCAGGAACATGTG 12540815 Query 108661 CCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCA 108720 | ||||||||||||| || |||| || || ||| ||||||| ||||| |||||||| Sbjct 12540816 CAAACATGCCCAGGGGGTGCTGGGACAGT---GGGGGGGGGACCGGGGCTCTGGAATCCT 12540872 Query 108721 TGGCATCCCCCAGGGTCAGAGGGCTGCTTTG 108751 ||| | |||||| ||| | ||| |||| || Sbjct 12540873 TGGTA-CCCCCA-AGTCGGGGGGTTGCTGTG 12540901 >seq101 Length=21342733 Score = 159 bits (176), Expect = 2e-34 Identities = 621/953 (65%), Gaps = 45/953 (5%) Strand=Plus/Plus Query 107632 TCAACATAACCAGAGACTGTGAGCGCTTCA---AG-GCC-CAAAGGAAGTTCATACAGTT 107686 ||||||| |||||||||||| | |||| || ||| |||| | |||| || Sbjct 17004572 TCAACATGACCAGAGACTGTAATTCTTTCATCAAGCGCCGCAAATACA--TCATGCAA-- 17004627 Query 107687 CCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 || || |||||||||||| || || ||||| ||||| || || ||||| || | || Sbjct 17004628 -CCGCTTAGTAAAGAAGAGGCGGAGTTTCCCATAGCCTATTCTATAGTGGTTCACCACAA 17004686 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGT 107804 || |||| |||| ||||| || | ||| | || |||||| |||| | ||||| Sbjct 17004687 AATCGAAATGCTTGACCGGCTCCTCAGGGCCATCTACATGCCCC--AGAATTTCTACTGC 17004744 Query 107805 GTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 | |||||||| || || | || | || | ||||| | | ||| ||| Sbjct 17004745 ATTCACGTGGACAGAAAATCGGCCGATTCGTTTTTGGCCGCGGTGATTGGCATCGCGTCC 17004804 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 |||||| || ||||| |||||||| || ||| ||||| |||||||||||| Sbjct 17004805 TGCTTCAGTAACGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTGTATGCCTCCTGGAGT 17004864 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982 | || || || ||||| ||||| ||| ||||| | || ||| | | || || |||| Sbjct 17004865 CGGGTTCAGGCCGACCTCAACTGCATGCAAGACGT-CTACAG-GATGAGCGCGGACTGGA 17004922 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||| | ||| ||||| | ||||| || || || ||||| || || |||| Sbjct 17004923 AGTACTTGATAAATCTTTGCGGTATGGACTTTCCTATTAAAACCAACTTGGAAATTGTCC 17004982 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGT 108099 | |||||| | ||| |||| | |||| | || ||||| | || || | Sbjct 17004983 GGAAGCTCAAGTCGCTGATGGGTGAAAACAACCTAGAAACTGAGAGAATGCCATCCAAT- 17005041 Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCT-ACCAGC 108158 |||||| | | |||||| | | ||| ||| || || | | || || | | Sbjct 17005042 --AAAAAAGAAAGGTGGAAAAAGCATTATACGGTTGT-GA---ACGGAAAGCTGACGAAC 17005095 Query 108159 AAGATGAAGGACC-----CTCCC-CCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 | | || ||| ||||| ||| | | ||| |||| |||| | ||||||| Sbjct 17005096 ACGGGGACTGACAAAATGCTCCCTCCTCTTGAGACACCTCTGTTTTCAGGCAGTGCCTAT 17005155 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTG 108272 || |||| | | | | || |||| |||| || ||| ||| | | Sbjct 17005156 TTCGTGGTCAGTAGGAAGTACGTGGGGTATGTGCTAGAGAATGAAAAAATCCAGAAGTTT 17005215 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 | || |||| |||||||| || ||||| || || | ||||||||||| | ||| | Sbjct 17005216 ATGGAGTGGGCGAAAGACACGTACAGCCCGGATGAGTATCTCTGGGCCACTATCCAGAG- 17005274 Query 108333 GCTCCGTGGATG--CCTGGCTC--TGTTCCTA-GCCACCCCAAGTATCACATCTCAGACA 108387 | ||| || ||| || || || ||| |||| |||| |||||| |||| || |||| Sbjct 17005275 GATCCCTG-ATGTCCCGGGTTCCCTGTCCCTAAGCCAG---AAGTATGACATGTCCGACA 17005330 Query 108388 TGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGG 108447 || || || || ||| ||||||| ||||||||| ||| || ||||| || ||| | Sbjct 17005331 TGCACGCGATTGCAAGGTTCGTCAAATGGCAGTACTTCGAAGGTGATGTTTCCAAGGGTG 17005390 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | || || |||||||| ||| |||| | | | | ||| | | ||| || || | Sbjct 17005391 CCCCCTACCCACCCTGCAGTGGGGTCCACGTGCGTTCTGTGTGCGTGTTCGGAGCAGGTG 17005450 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || || ||||||| | | || |||||| | || || |||||||||||| || Sbjct 17005451 ACTTGAACTGGATGTTACGCAAGCATCACTTGTTCGCCAACAAGTTTGACACG 17005503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348167699635206