Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq77 141 7e-29 seq48 93.3 3e-14 >seq77 Length=12846609 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||||||||| ||| ||||||||| ||||||||||| | Sbjct 3757398 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3757339 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| ||||| || ||||||| ||| |||||||| || Sbjct 3757338 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 3757279 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | | |||| | ||||||| Sbjct 3757278 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 3757219 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || ||||| || ||||| |||||||| ||||| |||||| Sbjct 3757218 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 3757171 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 3757152 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3757093 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| |||||||| || | || ||||||||| Sbjct 3757092 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3757033 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || ||||| Sbjct 3757032 ATCTTCGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTA 3756973 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 3756972 CCGGTCAGGGTCTTCACGAAGATCTGCATG 3756943 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 3756924 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3756865 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| |||||||| || | || ||||||||| Sbjct 3756864 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3756805 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || ||||| Sbjct 3756804 ATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 3756745 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||| ||||| |||||| Sbjct 3756744 CCTGTCAAGGTCTTCACGAAGATCTGCATG 3756715 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| || || | | || ||| Sbjct 3756696 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGGGGGCCCATCTTCC 3756637 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| |||||||| || | || ||||||||| Sbjct 3756636 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 3756577 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || ||||| Sbjct 3756576 ATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 3756517 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||| ||||| |||||| Sbjct 3756516 CCTGTCAAGGTCTTCACGAAGATCTGCATG 3756487 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 3756468 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3756409 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || ||||| | ||| |||||||| || | |||||||||||| Sbjct 3756408 AGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 3756349 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||||| ||| || || || Sbjct 3756348 ATCTTCGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTTTTA 3756289 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||| ||||| ||||| Sbjct 3756288 CCGGTCAAGGTCTTCACGAAGATCTGCAT 3756260 >seq48 Length=2952444 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||| ||||| || ||| |||||||||||||| || Sbjct 2404019 GCCACCTCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 2403960 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| ||||| || || Sbjct 2403959 AAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGGGG 2403900 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| || || || || ||| || | | | |||| | |||||| Sbjct 2403899 GATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 2403840 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||| || |||||||| ||||| |||||||| ||||| |||||| Sbjct 2403839 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 2403791 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| ||| || || ||| ||||| |||||||| || Sbjct 2404247 GCCACCCCTCAGACGGAGAACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCAGA 2404188 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || ||||| || || || || || |||| || ||| ||||| || || Sbjct 2404187 AAGAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGGGG 2404128 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| || || || || ||| || | | | |||| | |||||| Sbjct 2404127 GATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 2404068 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||| || |||||||| ||||| |||||||| ||||| |||||| Sbjct 2404067 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 2404019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394960512015199