Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq63 176 4e-39 seq1 100 3e-16 >seq63 Length=14173813 Score = 176 bits (194), Expect = 4e-39 Identities = 395/591 (67%), Gaps = 2/591 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || || || | Sbjct 113935 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCTATCCT 113877 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| |||| ||||| || |||||||||||||| || ||||||||||| ||||| | Sbjct 113876 CTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTA 113817 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| |||||||||||| | | || || || | ||||||| || | | | Sbjct 113816 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTCCAGCATAAG 113757 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 || || || | |||||||||||||| |||||| |||||| | || || || || Sbjct 113756 TCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTT 113697 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 || || | | | | ||||| | | || | || | | | || || Sbjct 113696 CACGGGCAAGGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCATTGATAATGATTTC 113637 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | | | | | |||||| || || ||||| || || | || ||||| || Sbjct 113636 CCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTC 113577 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 ||| || | |||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 113576 ACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG 113517 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 || || || || ||||| ||||| | || || || || |||||||| ||||| || || Sbjct 113516 GCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 113457 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 | ||||| || | | ||||||||| | | || | ||||| | ||||| Sbjct 113456 AGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAA 113397 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14445 |||||| || | || || || | | || |||||| || || ||||| || Sbjct 113396 AGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAA 113346 >seq1 Length=9663177 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 2449025 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 2449083 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 2449084 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2449143 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 2449144 CATAAAGTCAAATGGATTT 2449162 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 2450221 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 2450280 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || || || ||||| | Sbjct 2450281 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 2450340 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 2450341 CCACAACCCGTTCTCC 2450356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482201987626920