Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq63 93.3 8e-14 seq1 84.2 4e-11 >seq63 Length=14173813 Score = 93.3 bits (102), Expect = 8e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| | || ||||||||||||||| |||| | || || || || |||| Sbjct 113440 TTGTGGCCTTTGCCACTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCGATATTCT 113499 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | ||||||| ||||| | |||||||| | ||| || | Sbjct 113500 GGTTCAAGAATCGTGGCCTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAG 113559 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAA 102076 | || || | || | |||||||| ||| || |||| ||| Sbjct 113560 ATGAGGGCTTACACTGTGACTTTGCCTGCCTGATGTTCAAA 113600 >seq1 Length=9663177 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| || || ||||||||||||||| |||| | || || || || |||| Sbjct 2450346 TTGTGGCCTTTGCCGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCGTCGATATTCT 2450287 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||| | |||||||| Sbjct 2450286 GGCTCAAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGA 2450241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989281997827145