Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq63 226 4e-54 seq268 125 9e-24 seq1 120 4e-22 seq29 102 1e-16 seq81 89.7 6e-13 >seq63 Length=14173813 Score = 226 bits (250), Expect = 4e-54 Identities = 408/595 (69%), Gaps = 6/595 (1%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 33292 ||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| || | Sbjct 113936 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATCCT 113877 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 || || ||||| || | || || || || ||||| || ||||||| ||| ||||| | Sbjct 113876 CTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTA 113817 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 ||| || ||||| ||||| || || ||| || |||| || | || || | Sbjct 113816 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTCCAGCATAAG 113757 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 || ||||| || || || |||||| ||||| | |||||| | || ||||| || Sbjct 113756 TCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTT 113697 Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAA 33532 || || | ||| | | || ||||| || | || | ||||| | || || Sbjct 113696 CACGGGCAAGGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCATTGATAATGATTTC 113637 Query 33533 TCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATC 33592 || || | | ||| ||| ||| | | ||||| ||||||| || || || || Sbjct 113636 CCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTC 113577 Query 33593 GCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAG 33652 ||||| | ||||| ||||| ||||| | ||| || ||||| ||||| || ||||| || Sbjct 113576 ACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG 113517 Query 33653 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTAC 33712 |||||| || || | ||| ||||| || || || || || ||||||||||||||||| || Sbjct 113516 GCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 113457 Query 33713 TGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 33769 | |||||||| | || | |||||||| | | | |||| ||||| Sbjct 113456 AGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACGCAA 113397 Query 33770 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 ||||||||| |||||||| |||||||||||||| || || |||||||| |||||| Sbjct 113396 AGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGA 113342 >seq268 Length=8074579 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 364424 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 364483 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 364484 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 364543 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 364544 CTGTTTCTTATACCATA 364560 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 373733 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACG 373792 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 373793 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 373852 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 373853 AGGCTCCAGGTAAATAGC 373870 >seq1 Length=9663177 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||||||||| || ||||| |||||||| || | Sbjct 2450221 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 2450280 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| || || ||||||| Sbjct 2450281 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 2450340 Query 33724 C 33724 | Sbjct 2450341 C 2450341 >seq29 Length=18482212 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| || | ||||| || || |||||||||| || ||| Sbjct 8419314 GTTACTTTCTATGATGTATATATTATTCTGCAAGCATTTATACTGACTACTGCTGTATTT 8419255 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||||||||||| |||||||| ||||| ||| ||| | |||| Sbjct 8419254 CTTGGTTTGACTGGATATACTCTACAATCTAAGAGAGACTTCAGCAAATTTGGAGCAGG 8419196 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299 || |||||||||||||||||| | |||||| ||| ||| ||| ||||| || | ||| Sbjct 8424688 GCCTTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACAGTGACA 8424629 Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACA 188343 ||| | | |||||||||||||| | || ||||||||| |||| Sbjct 8424628 GCTTCTTTTTTTTTATACTTTGAGTCTATACGGACATTTGTACA 8424585 >seq81 Length=24260673 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || |||| || |||||| Sbjct 5368906 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 5368965 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || |||| | | || || ||||| | | || ||| || |||| Sbjct 5368966 TACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 5369014 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 5372759 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 5372818 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 ||||||||||| || || ||||||| Sbjct 5372819 TATTGGATTGGAAAGATGACAAATC 5372843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629630079682320