Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq63 190 2e-43 seq81 116 3e-21 seq1 111 1e-19 seq268 96.9 3e-15 >seq63 Length=14173813 Score = 190 bits (210), Expect = 2e-43 Identities = 382/564 (68%), Gaps = 3/564 (1%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 ||||||| | | ||| | ||| || ||| | ||||| |||| |||| || || Sbjct 113909 ATTCTCTGTTGGACTTGACATCACTCCTATCCTCTGATACTCACCTACTCTATTCTCAAA 113850 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || |||||||| ||||| ||||| |||| || ||||||| ||| ||||| | ||| | Sbjct 113849 GAAGTTAGTCTTCCCTTCCAGTGAAATATTCTACATAAAGTCAAATGGATTTTCTACTCT 113790 Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487 ||| || || | |||||| ||| | | || ||||| || || || ||||| || Sbjct 113789 GAAAACCTTGCTAAAACCTAGCTCCAGCATAAGTCGGTCTGCCACAAACTCAATATATTG 113730 Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547 |||||| |||||| | || || || | ||| || | || | | | || || Sbjct 113729 CTTCATTAACGTGCAATTCGTCCCAATGAGCTTCACGGGCAAGGCCTCCATGAGGAATTC 113670 Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATG 11607 || | || | || |||| || || || | | | | || ||| ||| ||| Sbjct 113669 CTGCTAGATCTGAATGGCATTGATAATGATTTCCCTCACTCTCTGCTCAGAAGGTTTATG 113610 Query 11608 TAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTAT 11667 | | ||||| ||||| | || ||||| ||||| ||||| || || ||||| || || Sbjct 113609 GACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAAT 113550 Query 11668 TAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGC 11727 |||||||| |||||||| | || ||||||| || || || || | ||| ||||| | Sbjct 113549 AAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCACGATTCTTGAACCAGAATATCGA 113490 Query 11728 AGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC 11787 ||||| |||||||||||||| ||||| ||||||| ||||| || || || | |||||| Sbjct 113489 CGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGTGGCAAAGGCCACAACCCGTTCTCC 113430 Query 11788 ATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCA 11844 ||| || ||| ||| ||||| |||||||| || ||||| ||||| || Sbjct 113429 ATAGGTAGCCTCTTTGTCCCCAATCCAACGCAAAGCCCAATCTGCCTTCTTCTTTACACA 113370 Query 11845 TTCCATTGTTTCTATAGCGTTAAA 11868 |||||| || || || || || Sbjct 113369 AGGCATTGTCTCGATGGCATTGAA 113346 >seq81 Length=24260673 Score = 116 bits (128), Expect = 3e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| |||||||| | ||| ||||| | |||| ||| | Sbjct 5360704 CTTCATCTCTGCTGATGAGTTCATTGGAAAATGTGAGTCCAGGCATAAGACCTCTTTTCT 5360763 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| | Sbjct 5360764 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 5360823 Query 11772 CTACTACTCTTT 11783 | || ||||||| Sbjct 5360824 CCACCACTCTTT 5360835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 5368016 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 5368075 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 5368076 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACCTCC 5368121 >seq1 Length=9663177 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||||| || ||||| || Sbjct 2450223 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCTTG 2450282 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| || Sbjct 2450283 AGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGGCC 2450342 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 2450343 ACAACCCGTTCTCC 2450356 >seq268 Length=8074579 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| ||||| ||||| ||| Sbjct 364424 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 364483 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 364484 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 364543 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 364544 CTGTTTCTTATACCAT 364559 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | || Sbjct 380728 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 380787 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | |||||| || | ||| |||||||| | | Sbjct 380788 TATGTTTCAATAGCAGCATCGATATCTTCTTTGTGAATCCCCACAGACACCCTCATCAAC 380847 Query 38533 ATATGTTGTGGTCTTTCT 38550 |||||||||||||||||| Sbjct 380848 ATATGTTGTGGTCTTTCT 380865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468385302597360