Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq10 143 2e-29 seq125 91.5 1e-13 seq100 89.7 4e-13 >seq10 Length=40277251 Score = 143 bits (158), Expect = 2e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||||||| || |||| || || || |||||||||||||||||||| || | Sbjct 9528510 TCAGGCCGGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 9528569 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||||||||||||||||||| || Sbjct 9528570 GCACGCCCAGGCCCATGTCCCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTTCC 9528629 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 ||||||| ||||| || | | || || ||||| || |||||| | | || || | || Sbjct 9528630 CCACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAGAGGAAGATCTGAGG 9528689 Query 21169 GG 21170 || Sbjct 9528690 GG 9528691 >seq125 Length=3337254 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/172 (72%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 |||||||| || ||||| || || || ||||| || || || |||| | || || Sbjct 3252553 TCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACGAAGTTAGCTGGCTTC 3252612 Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTA---GCTGGCGATGTTAAAC 21047 ||||||| || ||| |||| || || || || ||||| || |||||||||| || Sbjct 3252613 AGGCCCGCGATGTGTGCGACCATGTAGGTGAGCAGGGCCTACGAGCTGGCGATG---AAA 3252669 Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCT 21099 || || || ||||||||||| ||||| ||| ||| | |||| ||||||| Sbjct 3252670 GGCACACCCAGGCCCATGTCTCACGACCTGTGGCACAACGGGCAAGACAGCT 3252721 >seq100 Length=27299513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 267/407 (66%), Gaps = 4/407 (1%) Strand=Plus/Plus Query 2787 TGTATTCGGTAAAATTAATTGATGGAAAAAATACATCACAATCAAAACTCTCCATAATGC 2846 |||||| | |||| |||| |||||||||| |||| ||||| || |||||| | Sbjct 17814259 TGTATTTGTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATAATCC 17814318 Query 2847 GCGTAATATATAGTTTTA-AGGGACACTTATAGTTAAGAACACTCTCATAAACAGATTTT 2905 || | | ||||| | | | || | | | ||| | | || ||||||||| | Sbjct 17814319 TTGTCACAAATAGTCTAAGATGGCCTGGTTT-GTTCATGGCTTCCTTATAAACAGAACTG 17814377 Query 2906 CCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTATTG-TCTATAGAAATT 2964 ||||| | | ||| ||| ||| | || | | || || ||| || ||| | || Sbjct 17814378 CCTCCCACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGTTGCTCAATA-AGTTT 17814436 Query 2965 AAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTC 3024 || ||||| || || || | | ||||| || ||||| || || ||||| | || Sbjct 17814437 TAAGGCATCATCCAGACTTTTGCCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGGTC 17814496 Query 3025 TCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAA 3084 |||| | || | ||||||||||| | | ||| || ||||| ||||| || || || Sbjct 17814497 GTTGCTGAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATAGAGAA 17814556 Query 3085 CCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGT 3144 |||||| | | |||||||| |||| ||||| || ||| | || || | || | || Sbjct 17814557 CCATGTCTTCCTACCCATAATCACCAAATTCTGTTTCCCTTCTACTGAGGAGGTTGTGGT 17814616 Query 3145 CATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||| | || ||| || | | ||| || || || ||||| |||| Sbjct 17814617 CATTCTTTGGAAAAACTTGAATTCATTCCTGAGCGGGGGCCAGGGCA 17814663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427651819167120