Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq63 232 9e-56 seq1 141 1e-28 seq268 129 8e-25 >seq63 Length=14173813 Score = 232 bits (256), Expect = 9e-56 Identities = 413/599 (69%), Gaps = 14/599 (2%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775 ||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| || | Sbjct 113936 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATCCT 113877 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || || ||||| || | || || || || |||||||| ||||||| ||| ||||| | Sbjct 113876 CTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTA 113817 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| || ||||| ||||| || | ||| || |||| || | || || | Sbjct 113816 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTCCAGCATAAG 113757 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 || ||||| | || || |||||| ||||| | |||||| | || || || || Sbjct 113756 TCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTT 113697 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 || || | ||| | | || ||||| || | || | || | | ||||| || Sbjct 113696 CACGGGCAAGGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCAT---TGATAAT-GA 113641 Query 42016 T----CTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 | || ||| | | ||| ||| || | | ||||| ||||||| || || | Sbjct 113640 TTTCCCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAA 113581 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 | || ||||| | ||||||||||| ||||| | ||| |||||||| ||||| || |||| Sbjct 113580 AGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCA 113521 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 | |||||||| || || | ||| ||||| |||||||| || ||||||||||||||||||| Sbjct 113520 TCAGGCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTT 113461 Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACT 42248 | || | |||||||| | || | |||||||| | | | |||| ||||| Sbjct 113460 CCACAGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAAC 113401 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 ||||||||| |||||||| |||||||||||||| || || |||||||| |||||| Sbjct 113400 GCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGA 113342 >seq1 Length=9663177 Score = 141 bits (156), Expect = 1e-28 Identities = 104/121 (86%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||||||||| || ||||| |||||||| || | Sbjct 2450221 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 2450280 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| |||||||| || |||||||||||||||||||| || || ||||||| Sbjct 2450281 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 2450340 Query 42207 C 42207 | Sbjct 2450341 C 2450341 >seq268 Length=8074579 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 364424 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 364483 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 364484 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 364543 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 364544 CTGTTTCTTATACCAT 364559 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | ||| || ||||| || || || || ||||||| Sbjct 369045 CATAGGTTTCATATGGGCCATGCTCCCTGGCCAGGTCACAGCTAGCTTCCAAGGCTCCAT 369104 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 |||||| |||||| || |||| |||||| || || ||||| || || ||||| |||| Sbjct 369105 AATAAACGGTTTCAAATATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCAAAAGGAT 369164 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | |||||||| || ||||| | ||||| || || || || || || | || | Sbjct 369165 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 369224 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 369225 GTTTATTTGA 369234 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | || Sbjct 373737 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACGCTGT 373796 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| || Sbjct 373797 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 373856 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 373857 TCCAGGTAAATAGC 373870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670939376692440