Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq63 93.3 6e-14 >seq63 Length=14173813 Score = 93.3 bits (102), Expect = 6e-14 Identities = 169/247 (68%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 ||||| || || ||||| || |||| | | || || ||||| | |||| | || Sbjct 113343 CTCTTCAATGCCATCGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCTTTGCGT 113402 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| | ||| | || || | || | || | | ||||| || ||| | || || Sbjct 113403 TGGATTGGGGACAAAGAGGCTACCTATGGAGAACGGGTTGTGGCCTTTGCCACTGTGGAA 113462 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || ||||||||||| ||| ||||||| | || || ||| ||||||| || || || ||| Sbjct 113463 GGAATCTTCTTTTCTGGTTCTTTTGCGTCGATATTCTGGTTCAAGAATCGTGGCCTGATG 113522 Query 125511 CCCGGACTGACGCACAGT----AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566 || || || |||| | || || |||| |||| |||||| |||||||||| Sbjct 113523 CCTGGCCT----CACATTTTCCAATGAACTTATTAGCAGAGATGAGGGCTTACACTGTGA 113578 Query 125567 CTTTGCC 125573 ||||||| Sbjct 113579 CTTTGCC 113585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740838558886440