Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq48 158 3e-33 seq62 129 1e-24 seq77 127 5e-24 seq81 113 1e-19 seq262 104 5e-17 seq64 98.7 2e-15 seq103 93.3 1e-13 seq1 93.3 1e-13 seq121 91.5 3e-13 >seq48 Length=2952444 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || || ||||||||||| || || ||| Sbjct 2404021 ATGCCACCTCTCAGGCGCAGGACCAGATGCAGGGTCGACTCTTTCTGAATGTTGTAATCA 2403962 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || |||||||| || |||||||| || ||||| Sbjct 2403961 GAAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCAGGG 2403902 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||| || ||||| || || |||||||| | ||| || || || || Sbjct 2403901 GGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 2403842 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || || || |||||||| Sbjct 2403841 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2403792 Score = 156 bits (172), Expect = 1e-32 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || |||||||| || || || ||| Sbjct 2403565 ATGCCACCTCTCAGGCGCAGGACCAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAATCA 2403506 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || |||||||| || ||||| Sbjct 2403505 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 2403446 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||| || ||||| || || |||||||| | |||||| || || || Sbjct 2403445 GGGATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGCTCC 2403386 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || || || || || |||||||||||| Sbjct 2403385 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 2403332 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| ||||| | || ||||| || || || ||| Sbjct 2404216 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCA 2404157 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| || ||||| || || || |||||||| || ||||| || || Sbjct 2404156 GCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 2404097 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || || ||||| || || || ||||| || || || || Sbjct 2404096 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2404037 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2404036 TTCACGAAGATCTGCAT 2404020 >seq62 Length=55877296 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||| ||||||| ||||| |||||||| ||| | || ||||| || | || | Sbjct 11741733 GTTGATACTTTCTGGATATTGTAGTCAGAAAGAATGTGGCCATCTTCCAGCTCCTTGTCT 11741674 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||| ||||| |||||||||||||| |||| || || Sbjct 11741673 GCAAAGATGAGCCTCTGCTGGCCAGGGGGTATGCCTTCTTTATCCTGGGTCTTGGCCTTC 11741614 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| | | |||||| || ||||| | ||| || || || ||||| || || || || Sbjct 11741613 ACATTCTTCATGGTATCTCTGGGTTCCAACTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 11741554 Query 104543 TTTACAAATATCTGCATTTTG 104563 || | || | |||||||||| Sbjct 11741553 TTCATGAAGACCTGCATTTTG 11741533 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| ||| | | ||||| ||| | | || ||||| || || || || ||||| | Sbjct 47108452 CTTTCTGGATAATGTGATCAGAAAGACTGATGCCATCTTCCAGCTGCTTGCCTGCAAAGA 47108511 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | |||||||| || ||||| | || ||||||||||| || ||||| || || ||||| | Sbjct 47108512 TGAGCCTCTGCTGGTCAGGGGTGATGCCTTCTTTATCTTGGATCTTAGCCTTCACATTCT 47108571 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | ||| | || ||||| ||||| || | |||||||| | | || || || |||| Sbjct 47108572 TGATGGTGTTACTGGGTTCCACCTCCAGAGCGATAGTCTTGCTGATCAGGGTCTTCACAA 47108631 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 47108632 AGATCTGCAT 47108641 >seq77 Length=12846609 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| || || | || || || || | || || || ||||| || || |||||| Sbjct 3756717 ATGCCCCCCCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 3756658 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| | || ||||| || ||||| || ||||| || | |||||| || || || Sbjct 3756657 GATAGGGGGGGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGG 3756598 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 3756597 GGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCC 3756538 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || |||||||| || | || || || || |||||||| Sbjct 3756537 ACCTCCAGGGTGATGGTCTTACCTGTCAAGGTCTTCACGAAGATCTGCAT 3756488 >seq81 Length=24260673 Score = 113 bits (124), Expect = 1e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 269130 AAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTA 269189 |||| | || |||||||| ||||||||||| || ||||| || || |||||||| |||| Sbjct 5360835 AAAGAGTGGTGGCTTTTGCTGCTGTAGAAGGGATTTTCTTCTCAGGATCTTTTGCTGCTA 5360776 Query 269190 TCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAA 269249 | || ||| | ||||||||||| |||||||| ||| | || || || || ||| | || | Sbjct 5360775 TATTCTGGCTAAAGAAAAGAGGTCTTATGCCTGGACTCACATTTTCCAATGAACTCATCA 5360716 Query 269250 GCAGGGACGAAG 269261 |||| || |||| Sbjct 5360715 GCAGAGATGAAG 5360704 >seq262 Length=24878108 Score = 104 bits (114), Expect = 5e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || ||||| || | |||||||| ||| | |||||||||||| Sbjct 23365838 AGATGAAGAGTGGACTCCTTTTGAATGTTGT-GTCAGATAAAGTACGTCCGTCTTCTAGT 23365896 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || | |||| || || || ||||||||||| || || |||||||| |||||||| ||| Sbjct 23365897 TGCTCGCCAGGGAAGATCAGTCTCTGTTGATC-GGGGGAATTCCTTCCTTATCCTGGATC 23365955 Query 104474 TTTGCTTTTACATTTTCTACGGTATC 104499 || || | |||| ||||| ||||| Sbjct 23365956 TTGGCCTCTACAATTTCTGTTGTATC 23365981 >seq64 Length=13122742 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || ||||||| || | |||||||| ||||| || |||||||| | | || || Sbjct 10903354 GACTCTTTCTAGATGCTGTAGTCAGAAAGAGTGGGGCCATCTTCTAGCTCGCTGCCTACA 10903295 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT--TTGCTTTTA 104483 || || |||||||| || ||||| | || ||||||||||||| |||| | | ||| | Sbjct 10903294 AAGATGAGCCTCTGCTGGTCAGGGGAGATGACTTCTTTATCCTGGATCTTATAGTTTTCA 10903235 Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 ||||||| | || || || | | ||||| || ||||| |||| ||||| | || | Sbjct 10903234 CATTTTCAATAGTGTCACTGTGCCCCACCTCCAGAGTAATGATCTTGCCAGTCAAGGTCT 10903175 Query 104544 TTACAAATATCTGCATTTTGT 104564 | | || || |||||||||| Sbjct 10903174 TCAGGAAGATTTGCATTTTGT 10903154 >seq103 Length=31278376 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 104371 TTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAAT 104430 |||||| ||||||||||| ||||| | | || || || || ||||| || ||| | | Sbjct 755049 TTTCTGGATATTATAGTCTGATAGGGCACAGCCATCCTCCAGCTGTTTGCCTACAACAGT 754990 Query 104431 TAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 || | |||||| ||||| || || | || || || || || ||||| ||||| | Sbjct 754989 CAGACACTGTTGGTCAGGCAAAATGCCCTGCTTGTCTTGGATTTTGGCTTTGACATTCTT 754930 Query 104491 TACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | ||| || || || | || || || || |||||||| || || | ||| || ||||| Sbjct 754929 GATGGTGTCACTGGGCTGCACTTCAAGGGTGATAGTCTTGCCTGTCACTGTCTTCACAAA 754870 Query 104551 TATCTGCAT 104559 |||||||| Sbjct 754869 GATCTGCAT 754861 >seq1 Length=9663177 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| || | || || ||||||||||| ||||| || |||||||| || |||||||| Sbjct 2450356 GGAGAACGGGTTGTGGCCTTTGCCGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCG 2450297 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || || ||| | |||||| | ||||| ||||| || | || || || || ||| | Sbjct 2450296 TCGATATTCTGGCTCAAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTT 2450237 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 2450236 ATTAGCAGAGATGA 2450223 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 2449167 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 2449108 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 2449107 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 2449048 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 2449047 TTTACCTTGGATGCTGACTTCTAA 2449024 >seq121 Length=26706505 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||| | | ||||| || || || |||| | ||||| || || || |||| ||| Sbjct 3317317 TAGTCACACAAAGTTCGGCCATCGTCCCGTTGCTCGCCAGCGAAGATCAGTGTCTGCTGA 3317258 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| | |||||| ||| |||| |||| || ||||| ||| |||| ||||| Sbjct 3317257 TCAGGAGGAACTCCTTCCTTACCCTGGATCTCGGCCTTTACGTTTCCTACCGTATCTGAG 3317198 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | ||| || || | || || ||| | || || || ||| |||| |||||||| ||| Sbjct 3317197 GATTCAACTTCGACAGTGATGGTCGTCCCCGTCAGGACTTTCACAAGAATCTGCATCTTG 3317138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151047015156852