Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq10 127 1e-24 >seq10 Length=40277251 Score = 127 bits (140), Expect = 1e-24 Identities = 128/165 (78%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || ||||| |||| || |||||||| ||||| || ||||||||||||||| ||||| Sbjct 9528512 AGGCCGGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 9528571 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| ||||||||| |||||| ||||| || || ||||| ||| | Sbjct 9528572 ACGCCCAGGCCCATGT-CCCCCGACCGCTGGTACAGCTGGCAGGACAGCTCGCCGTTCCC 9528630 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| ||||| || | || | |||||||||||| || || || Sbjct 9528631 CACGTAGAACTGGCAGAGGGCATGGCACGGAGGAAGGGCCATCAG 9528675 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| ||||| || |||| ||||||||| || || || || || |||| || || |||| Sbjct 9531083 TGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 9531142 Query 25841 CCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCT 25900 | |||| || ||| | ||||| ||||||| || || |||||||||||||| | Sbjct 9531143 CTCTGTTGCAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCGTTGGCGTCCCAGATTT 9531202 Query 25901 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 | || ||||| || || || || | |||||| || || Sbjct 9531203 TCACTCCCTTGGAAGACAGGTCCTTAGCGTTTGTAGATCC 9531242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340038860074287