Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq36 134 2e-26 >seq36 Length=6971902 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||| ||||||| || | Sbjct 585994 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 586053 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || || ||||| || ||| |||||||||||||| ||||| || | Sbjct 586054 TGCCCCAGGCTGAGAACCACGACCCAGACATCAAGGAGCACGTGAACTCCCTGGGGGAAA 586113 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || |||||||| |||| Sbjct 586114 AGCTGAAGACCCTGCGGCT 586132 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || | ||| ||||||||||||||||||||||||||||| || || ||||| | Sbjct 588307 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAATTTGACATCTTCATCAACTACA 588366 Query 10419 TAGAAGCATACATGACCATGA 10439 ||||| | |||||||| |||| Sbjct 588367 TAGAAACCTACATGACAATGA 588387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547216224685440