Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq14 150 3e-31 seq151 122 1e-22 >seq14 Length=22407316 Score = 150 bits (166), Expect = 3e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 ||||||| ||||| | || ||| ||| ||||| || || |||| || ||||| |||| Sbjct 20342012 TGGTCTGGAACAGCCGCTCATCATCCCACTCTGGGTGCTCCTGTTTAAGCACATCACACA 20341953 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 ||||||| ||||||| | ||| || || || |||||||| |||||||||||||| || | Sbjct 20341952 CTCTGTTATGTTCCCGCAACCAAATTGTGGCATACATCATCAGACCAGGCACCAGCCCGA 20341893 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 || | || || || || || | || | | ||| || || | ||| || |||||||| | Sbjct 20341892 AAACTTCCTGGCCCACGGCAAACCGTAGGTGTTCAGGAACATGGGGTGGGTAGATCATCT 20341833 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||| ||||||||| | ||| ||||||| || || ||||| Sbjct 20341832 CCACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAAT 20341787 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 20340979 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 20340920 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 20340919 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 20340860 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 ||| |||| | || | |||||| ||||||||||| | | | ||| || || | Sbjct 20340859 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 20340800 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| || ||||| Sbjct 20340799 TTTCTTGCCTGAAAAATGAGAA 20340778 >seq151 Length=15485885 Score = 122 bits (134), Expect = 1e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || |||| || || ||||| ||||| || |||||||| | || | Sbjct 8741407 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTTGGCTTCCAGTACTCTGGAG 8741466 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | |||||| ||||||||||| |||||||| | || | || | Sbjct 8741467 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 8741526 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||||| ||| || || ||| |||| | | || | ||| ||||||| Sbjct 8741527 TCTCCCCAAAGATGGAGTTTGGGTGGCACTTCTCCAGAAGCAGCCCCGGGTAGAACTCCA 8741586 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||||||||| || || | | ||||| || || ||||| || |||| Sbjct 8741587 AGGCATCGATGTCTCCATACAGCTCTTCCAACTCGGCTGCAATCTCCTTCTCCCCTG 8741643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708313845597360