Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09]
23,819 sequences; 2,301,379,344 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq63 154 2e-32
seq81 95.1 1e-14
seq1 87.8 2e-12
>seq63
Length=14173813
Score = 154 bits (170), Expect = 2e-32
Identities = 404/608 (66%), Gaps = 14/608 (2%)
Strand=Plus/Minus
Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180
||| | ||| || |||||||| || | ||| ||| ||| | ||||||| | |||
Sbjct 113942 ATTCACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 113883
Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240
|| | ||||| |||| ||||| || || || || || ||||| ||||||| ||| ||
Sbjct 113882 TATCCTCTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 113823
Query 21241 AGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA 21300
| | |||||| |||||||||||||| | | || | || || |||| || || |
Sbjct 113822 ATTCTACATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTC-CA 113764
Query 21301 TAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGA 21359
|||| || ||||| ||||| || |||||||| |||||| |||||| | || |
Sbjct 113763 GCATAAGTCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAA 113704
Query 21360 TCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTT--TTCTATA---GAGACGGCTTC 21414
| | || || || | || || | | || || | ||| | || | ||| |
Sbjct 113703 TGAGCTTCACGGGCAAGGC----CTCCATGAGGAATTCCTGCTAGATCTGA-ATGGCATT 113649
Query 21415 AACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474
| ||| || | | | || | ||| || | | ||||| |||||||
Sbjct 113648 GATAATGATTTCCCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAG 113589
Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534
|| ||||| ||||| || || || ||||| || || || | |||||| |||||||| |
Sbjct 113588 GCAGGCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAG 113529
Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594
|| ||||| | || | || || ||||| ||||| |||||||| | || ||||||||
Sbjct 113528 GCCAGGCATCAGGCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAA 113469
Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654
|| || || || | ||||| || || | ||||| || || |||| ||||| |||
Sbjct 113468 GATTCCTTCCACAGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCC 113409
Query 21655 TATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTT 21713
||||| ||||| | |||||| |||||| | |||| ||||| || || || |
Sbjct 113408 AATCCAACGCAAAGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTCGATGGCAT 113350
Query 21714 TTAAAAGA 21721
| || |||
Sbjct 113349 TGAAGAGA 113342
>seq81
Length=24260673
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| ||||||||| ||| || ||| | | | |
Sbjct 5341865 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 5341924
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
|||||| || ||||| ||| || || |||||||| || ||||| || || || ||
Sbjct 5341925 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTT 5341984
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 5341985 CCATAAAATCAAAGGGATTTTC 5342006
>seq1
Length=9663177
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186
||| || |||||||| || | ||| ||| ||| | ||||||| | |||||| |
Sbjct 2449024 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 2449083
Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246
||||| || | ||||| || || || || || ||||| ||||||| ||| ||| ||
Sbjct 2449084 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2449143
Query 21247 CATAAAATCAAATGGATTTTC 21267
|||||| ||||||||||||||
Sbjct 2449144 CATAAAGTCAAATGGATTTTC 2449164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531742433185560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |