Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq63 154 2e-32 seq81 95.1 1e-14 seq1 87.8 2e-12 >seq63 Length=14173813 Score = 154 bits (170), Expect = 2e-32 Identities = 404/608 (66%), Gaps = 14/608 (2%) Strand=Plus/Minus Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180 ||| | ||| || |||||||| || | ||| ||| ||| | ||||||| | ||| Sbjct 113942 ATTCACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 113883 Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240 || | ||||| |||| ||||| || || || || || ||||| ||||||| ||| || Sbjct 113882 TATCCTCTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 113823 Query 21241 AGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA 21300 | | |||||| |||||||||||||| | | || | || || |||| || || | Sbjct 113822 ATTCTACATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTC-CA 113764 Query 21301 TAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGA 21359 |||| || ||||| ||||| || |||||||| |||||| |||||| | || | Sbjct 113763 GCATAAGTCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAA 113704 Query 21360 TCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTT--TTCTATA---GAGACGGCTTC 21414 | | || || || | || || | | || || | ||| | || | ||| | Sbjct 113703 TGAGCTTCACGGGCAAGGC----CTCCATGAGGAATTCCTGCTAGATCTGA-ATGGCATT 113649 Query 21415 AACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 | ||| || | | | || | ||| || | | ||||| ||||||| Sbjct 113648 GATAATGATTTCCCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAG 113589 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||| ||||| || || || ||||| || || || | |||||| |||||||| | Sbjct 113588 GCAGGCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAG 113529 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| | || | || || ||||| ||||| |||||||| | || |||||||| Sbjct 113528 GCCAGGCATCAGGCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAA 113469 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 || || || || | ||||| || || | ||||| || || |||| ||||| ||| Sbjct 113468 GATTCCTTCCACAGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCC 113409 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTT 21713 ||||| ||||| | |||||| |||||| | |||| ||||| || || || | Sbjct 113408 AATCCAACGCAAAGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTCGATGGCAT 113350 Query 21714 TTAAAAGA 21721 | || ||| Sbjct 113349 TGAAGAGA 113342 >seq81 Length=24260673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||| | | | | Sbjct 5341865 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAAC 5341924 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||||| || ||||| ||| || || |||||||| || ||||| || || || || Sbjct 5341925 GTTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTT 5341984 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 5341985 CCATAAAATCAAAGGGATTTTC 5342006 >seq1 Length=9663177 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | ||||||| | |||||| | Sbjct 2449024 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCT 2449083 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| || Sbjct 2449084 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 2449143 Query 21247 CATAAAATCAAATGGATTTTC 21267 |||||| |||||||||||||| Sbjct 2449144 CATAAAGTCAAATGGATTTTC 2449164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531742433185560