Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq63 223 4e-53 seq1 132 6e-26 seq268 131 2e-25 seq81 87.8 2e-12 >seq63 Length=14173813 Score = 223 bits (246), Expect = 4e-53 Identities = 411/599 (69%), Gaps = 14/599 (2%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014 ||| |||||| |||| || | |||| ||| ||| | || ||||| ||||| || | Sbjct 113936 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCTATCCT 113877 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || ||||| || | || || || || ||||| || ||||||| ||| ||||| | Sbjct 113876 CTGATACTCACCTACTCTATTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTA 113817 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 ||| || ||||| ||||| || | ||| || |||| || | || || | Sbjct 113816 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCTAGCTCCAGCATAAG 113757 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 || || || || || || |||||| ||||| | |||||| | || || || || Sbjct 113756 TCGGTCTGCCACAAACTCAATATATTGCTTCATTAACGTGCAATTCGTCCCAATGAGCTT 113697 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 || || | ||| | | || ||||| || | || | |||| | ||||| || Sbjct 113696 CACGGGCAAGGCCTCCATGAGGAATTCCTGCTAGATCTGAATGGCAT---TGATAAT-GA 113641 Query 33255 T----CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 | || || | | ||| ||| ||| | | ||||| ||||||| || || | Sbjct 113640 TTTCCCTCACTCTCTGCTCAGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAA 113581 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | || ||||| | ||||| ||||| ||||| ||||| |||||||| ||||| || |||| Sbjct 113580 AGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCA 113521 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | |||||||| || || | ||| ||||| || || || || ||||||||||||||||||| Sbjct 113520 TCAGGCCACGATTCTTGAACCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTT 113461 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACT 33487 | || | |||||||| | || | |||||||| | | | |||| ||||| Sbjct 113460 CCACAGTGGCAAAGGCCACAACCCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAAC 113401 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 ||||||||| |||||||| |||||||||||||| || || |||||||| |||||| Sbjct 113400 GCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCGATGGCATTGAAGAGA 113342 >seq1 Length=9663177 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||||||||| || ||||| |||||||| || | Sbjct 2450221 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCACGTTTCT 2450280 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| || || ||||||| Sbjct 2450281 TGAGCCAGAATATCGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCGGCAAAGG 2450340 Query 33446 C 33446 | Sbjct 2450341 C 2450341 >seq268 Length=8074579 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 364424 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATG 364483 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 364484 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 364543 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 364544 CTGTTTCTTATACCATA 364560 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 373733 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGCGCAAAGAAAAGGTCCCTGGCACG 373792 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 373793 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 373852 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 373853 AGGCTCCAGGTAAATAGC 373870 >seq81 Length=24260673 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || |||| || |||| Sbjct 5368904 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAA 5368963 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || || |||| | | || || ||||| | | || ||| || |||| Sbjct 5368964 AATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 5369014 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| Sbjct 5372758 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 5372817 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 ||||||||||| || || ||||||| Sbjct 5372818 GTATTGGATTGGAAAGATGACAAATC 5372843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622761725258040