Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ursus_20maritimus_20[refseq_20GCF_5F000687225.1_202014-05-09] 23,819 sequences; 2,301,379,344 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq268 95.1 3e-14 seq1 86.0 2e-11 >seq268 Length=8074579 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || ||||||||||||||||| | Sbjct 373879 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATTTTTGAGTTTCTTGATTTA 373820 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| ||||| || ||| |||||| | || || |||| ||| |||||| || Sbjct 373819 AAGAAGAACACAGGAAAGGAAGAACAGCGTGCCAGGGACCTTTTCTTTGCGCTTTGGATT 373760 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 373759 CCAGATCTCTTCATGAAACGAGTGGAG 373733 Score = 86.0 bits (94), Expect = 2e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 364952 AGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTT 365011 ||| ||| |||| | |||| || || ||||||| ||||||| || || |||||||||| Sbjct 362389 AGAGCATACCAGAAATTCCTGATGACCTGAAGCAACTTTACAAGACTGTGTGGGAAATTT 362330 Query 365012 CCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGT 365071 | | ||| | || | ||||| || || | |||||||| || ||| ||||||| Sbjct 362329 CACAGAAAACCGTTCTTAAGATGGCAGCTGAAAGAGGTGCTTTCATTGATCAAAGCCAGT 362270 Query 365072 CGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACG 365131 | || ||| | ||| || |||| | || | ||| || || ||||| ||||||| Sbjct 362269 CTTTGAACATCCACATCGCTGAGCCTAACTATGGCAAACTCACTAGTATGCACTTCTACG 362210 Query 365132 GGTGGAA 365138 | ||||| Sbjct 362209 GCTGGAA 362203 >seq1 Length=9663177 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547 ||||| || | || ||||| | || ||||| || ||||||||||| | ||||| | | Sbjct 2450353 GAACGGGTTGTGGCCTTTGCCGCTGTGGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGTC 2450295 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 || || ||||| || ||||||| | ||||| || || |||||||| ||||| | || Sbjct 2450294 GATATTCTGGCTCAAGAAACGTGGCCTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 2450235 Query 22608 TAGCCGAGATGAGG 22621 |||| ||||||||| Sbjct 2450234 TAGCAGAGATGAGG 2450221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302955841326458